I got ansible running and installed the tools on my local instance of Galaxy. However, the
tools are not shown on the tool panel on the web page. Wonder if the tools has been
installed in the wrong place, or something else is wrong. Have been searching the Wiki and
list without any resulst. Please point me to the right directions.
From: Marius van den Beek [mailto:email@example.com]
Sent: Friday, March 4, 2016 12:27 PM
To: William Ge <wge(a)centrilliontech.com>
Cc: Dannon Baker <dannon.baker(a)gmail.com>; galaxy-dev(a)lists.galaxyproject.org
Subject: Re: [galaxy-dev] ERROR: PIP is not a legl parament of an Ansible Play
On 4 March 2016 at 20:47, William Ge
Thanks a lot, Marius!
Sure, you're welcome!
I am a newbie to this complex system and want a quick clone/install locally. I have spent
over two weeks on the process. There are many configuration files and environment
variables or dependencies to sort out. I wish the sample configuration files would include
most of the options so that new installation just needs to comment out or delete unwanted
The galaxy team definitely aims for this, and usually you should (tm) be able to clone
galaxy and use run.sh to get going.
If you can tell us the steps where you were struggling we can try to update or clarify the
documentation (A lot of it is on the wiki).
Anyway, here is the error I got:
[galaxy@Pegasus ansible-galaxy-tools]$ python files/install_tool_shed_tools.py -h
Traceback (most recent call last):
File "files/install_tool_shed_tools.py", line 49, in <module>
logging.captureWarnings(True) # Capture HTTPS warngings from urllib3
AttributeError: 'module' object has no attribute 'captureWarnings'
If I run this after activating the galaxy_env and install ensible, bioblend, argparse and
importlib, the same error came up. I guess this is Python 2.6 issue. Any solutions known?