Hi Nicola,
Thank you very much! I'm checking with my biologists to see if any of those tools will work out for us. I'll be sure to open an issue if not.
Best,
Scott
On Mon, Feb 1, 2016 at 10:58 AM, Nicola Soranzo nsoranzo@tiscali.it wrote:
Hi Scott, it seems that devteam's picard repository in the Tool Shed ( https://toolshed.g2.bx.psu.edu/view/devteam/picard/ ) does not have a tool for this, but 4 tools include an automatic conversion of a FASTA dataset using CreateSequenceDictionary: BedToIntervalList, MergeBamAlignment, ReorderSam and ValidateSamFile.
If you think this is not the best approach, please open an issue at https://github.com/galaxyproject/tools-devteam
Chees, Nicola
On 01/02/16 14:02, Scott Szakonyi wrote:
Hello all,
I have some biologists here at Notre Dame who use the Picard Tools CreateSequenceDictionary application as part of their workflow. I've tried to locate it in the toolshed but all the Picard Tools versions that are available don't seem to include it. Does anyone know where I might find this tool to add to Galaxy?
Thanks!
-- Scott B. Szakonyi Research Programmer
*Center for Research Computing* 107 Information Technology Center Notre Dame, IN 46556 http://crc.nd.edu/http://crc.nd.edu
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