Hi Enis,
Thank you for the information! I saw many GalaxyIndicesFS are accumulated on my account and cleaned up.
Later I tried to launch cloudman ami, a different message I saw in paster.log:
18:35:32 - Master starting 18:35:33 - Successfully retrieved root user's public key from file. 18:35:34 - Trouble getting volume reference for volume vol-f9c4728e: EC2ResponseError: 400 Bad Request InvalidVolume.NotFoundThe volume 'vol-f9c4728e' does not exist.c69dcb4e-f924-4cbc-9c35-ef630bd18ff2 18:35:34 - Attempting to connect to a non-existent volume vol-f9c4728e 18:35:34 - Error processing filesystems in existing cluster configuration: 'NoneType' object has no attribute '__getitem__' 18:35:34 - ***** Manager failed to start ***** 18:37:14 - Initializing 'Galaxy' cluster type. Please wait...
The "vol-f9c4728e" name I can see from the instance (ssh to the instance) is encoded in /mnt/cm/pd.yaml file. In my account I have seen the new volumes are created after launching the cloudman they are having different id's: vol-06992971 cm-3102c4d1aa831d8da4e99f3c9896390c GalaxyTools vol-05992972 cm-3102c4d1aa831d8da4e99f3c9896390c GalaxyIndices
The df: Filesystem Size Used Avail Use% Mounted on /dev/xvda1 7.9G 5.2G 2.3G 70% / udev 3.7G 8.0K 3.7G 1% /dev tmpfs 1.5G 228K 1.5G 1% /run none 5.0M 0 5.0M 0% /run/lock none 3.7G 0 3.7G 0% /run/shm cgroup 3.7G 0 3.7G 0% /sys/fs/cgroup /dev/xvdb 414G 203M 393G 1% /mnt
I think I have to manually mount the new volumes to the instance then edit the configuration and restart the cludman ?
or are you seeing something wrong from my side.
Thanks in advance, Vipin http://galaxy.cbio.mskcc.org
Hi Vipin,
It seems there are too many volumes (or too much volume storage) in your AWS account and AWS is preventing any more from being created. You can either delete some volumes if you don't need them or send a request to AWS to increase your volume limit: https://aws.amazon.com/contact-us/ebs_volume_limit_request/
Cheers, Enis
On Mon, Oct 14, 2013 at 10:06 PM, Vipin TS vipin.ts@gmail.com wrote:
Hi dev-team,
I am trying to launch cloudman on AWS us-east-1a and I am getting the message *All cluster services started; the cluster is ready for use. (2013-10-14 19:45:52)*
I am seeing some error message in the log. * 19:05:33 - Master starting*
- 19:05:35 - Could not find service class matching userData service
entry: PSS*
- 19:05:35 - Completed the initial cluster startup process. This is
a new cluster; waiting to configure the type.*
- 19:06:11 - Migration service prerequisites OK; starting the service
- 19:06:11 - SGE service prerequisites OK; starting the service*
- 19:06:26 - Setting up SGE...*
- 19:06:40 - HTCondor service prerequisites OK; starting the service*
- 19:06:48 - Hadoop service prerequisites OK; starting the service*
- 19:07:04 - Done adding Hadoop service; service running.*
- 19:08:13 - Initializing 'Galaxy' cluster type. Please wait...*
- 19:08:14 - Error creating volume: EC2ResponseError: 400 Bad
Request VolumeLimitExceededMaximum number of active volumes bytes, 20, exceeded.66659429-b0dd-4f88-b763-36fd9232d3c4*
- 19:08:17 - Adding volume vol-f9c4728e (FS object for galaxy)...*
- 19:08:42 - Successfully grew file system FS object for galaxy*
- 19:08:42 - Successfully mounted file system /mnt/galaxy from
/dev/xvdf*
It seems that the galaxyIndices filesytem is not mounted to the instance. Also I am not able to start the postgres or Galaxy service through cloudman interface, both says that Cannot find the service.
Please find the attached image. I think I am missing the galaxyIndices volume from the image,. any idea about the failure to launch the instance.
Thanks, Vipin http://galaxy.cbio.mskcc.org
Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/