details: http://www.bx.psu.edu/hg/galaxy/rev/69615210cf99 changeset: 2755:69615210cf99 user: rc date: Wed Sep 23 13:25:22 2009 -0400 description: Fixed a bug in the new/edit request code. Now user can select all permitted folders & subfolders of a selected library when creating or editing a request.
2 file(s) affected in this change:
lib/galaxy/security/__init__.py lib/galaxy/web/controllers/requests.py
diffs (150 lines):
diff -r c7446ed27839 -r 69615210cf99 lib/galaxy/security/__init__.py --- a/lib/galaxy/security/__init__.py Wed Sep 23 11:08:36 2009 -0400 +++ b/lib/galaxy/security/__init__.py Wed Sep 23 13:25:22 2009 -0400 @@ -443,19 +443,21 @@ else: hidden_folder_ids = '%d' % folder.id return False, hidden_folder_ids - def get_showable_folders( self, user, roles, library_item, actions_to_check, showable_folders=[] ): + def get_showable_folders( self, user, roles, library_item, actions_to_check, hidden_folder_ids=[], showable_folders=[] ): """ This method must be sent an instance of Library(), all the folders of which are scanned to determine if - user is allowed to perform any action in actions_to_check. A list of showable folders is generated. - This method scans the entire library. + user is allowed to perform any action in actions_to_check. The param hidden_folder_ids, if passed, should + contain a list of folder IDs which was generated when the library was previously scanned + using the same actions_to_check. A list of showable folders is generated. This method scans the entire library. """ if isinstance( library_item, self.model.Library ): - return self.get_showable_folders( user, roles, library_item.root_folder, actions_to_check, showable_folders=showable_folders ) + return self.get_showable_folders( user, roles, library_item.root_folder, actions_to_check, showable_folders=[] ) if isinstance( library_item, self.model.LibraryFolder ): - for action in actions_to_check: - if self.allow_library_item_action( user, roles, action, library_item ): - showable_folders.append( library_item ) - break + if library_item.id not in hidden_folder_ids: + for action in actions_to_check: + if self.allow_library_item_action( user, roles, action, library_item ): + showable_folders.append( library_item ) + break for folder in library_item.active_folders: self.get_showable_folders( user, roles, folder, actions_to_check, showable_folders=showable_folders ) return showable_folders diff -r c7446ed27839 -r 69615210cf99 lib/galaxy/web/controllers/requests.py --- a/lib/galaxy/web/controllers/requests.py Wed Sep 23 11:08:36 2009 -0400 +++ b/lib/galaxy/web/controllers/requests.py Wed Sep 23 13:25:22 2009 -0400 @@ -474,45 +474,57 @@ # select lists are rendered. libraries = odict() for library in all_libraries: - showable_folders = trans.app.security_agent.get_showable_folders( user, roles, library, actions_to_check ) - if showable_folders: - libraries[ library ] = showable_folders - libui = self.__library_ui(libraries, **kwd) + can_show, hidden_folder_ids = trans.app.security_agent.show_library_item( user, roles, library, actions_to_check ) + if can_show: + libraries[ library ] = hidden_folder_ids + libui = self.__library_ui(trans, libraries, **kwd) widgets = widgets + libui widgets = widgets + request_type.request_form.get_widgets( user, **kwd ) return trans.fill_template( '/requests/new_request.mako', select_request_type=select_request_type, - request_type=request_type, + request_type=request_type, widgets=widgets, msg=msg, messagetype=messagetype) - def __library_ui(self, libraries, request=None, **kwd): + def __library_ui(self, trans, libraries, request=None, **kwd): params = util.Params( kwd ) lib_id = params.get( 'library_id', 'none' ) - lib_id_list = ['new'] + [str(lib.id) for lib in libraries.keys()] - lib_list = SelectField( 'library_id', refresh_on_change=True, refresh_on_change_values=lib_id_list ) + # if editing a request if request and lib_id == 'none': if request.library: lib_id = str(request.library.id) + selected_lib = request.library + else: + # new request + selected_lib = None + lib_id_list = ['new'] + [str(lib.id) for lib in libraries.keys()] + lib_list = SelectField( 'library_id', refresh_on_change=True, refresh_on_change_values=lib_id_list ) + # fill up the options in the Library selectfield + # first option if lib_id == 'none': lib_list.add_option('Select one', 'none', selected=True) else: lib_list.add_option('Select one', 'none') - for lib, folders in libraries.items(): + # all the libraries available to the user + for lib, hidden_folder_ids in libraries.items(): if str(lib.id) == lib_id: lib_list.add_option(lib.name, lib.id, selected=True) + selected_lib, selected_hidden_folder_ids = lib, hidden_folder_ids.split(',') else: lib_list.add_option(lib.name, lib.id) lib_list.refresh_on_change_values.append(lib.id) + # new library if lib_id == 'new': lib_list.add_option('Create a new data library', 'new', selected=True) else: lib_list.add_option('Create a new data library', 'new') + # data library widget lib_widget = dict(label='Data library', widget=lib_list, helptext='Data library where the resultant dataset will be stored.') - selected, value = lib_widget[ 'widget' ].get_selected() - if selected not in [ 'new', 'none' ]: + # show the folder widget only if the user has selected a valid library above + if selected_lib: + # when editing a request if request: if request.folder: current_fid = request.folder.id @@ -521,11 +533,24 @@ else: current_fid = params.get( 'folder_id', 'none' ) folder_list = SelectField( 'folder_id') - for f in folders: - if str(f.id) == current_fid: + # first option + if lib_id == 'none': + folder_list.add_option('Select one', 'none', selected=True) + else: + folder_list.add_option('Select one', 'none') + # get all show-able folders for the selected library + user, roles = trans.get_user_and_roles() + actions_to_check = [ trans.app.security_agent.permitted_actions.LIBRARY_ADD ] + showable_folders = trans.app.security_agent.get_showable_folders( user, roles, + selected_lib, + actions_to_check, + selected_hidden_folder_ids ) + for f in showable_folders: + if str(f.id) == str(current_fid): folder_list.add_option(f.name, f.id, selected=True) else: folder_list.add_option(f.name, f.id) + # folder widget folder_widget = dict(label='Folder', widget=folder_list, helptext='Folder of the selected data library where the resultant dataset will be stored.') @@ -536,7 +561,7 @@ helptext='Enter a name here to request a new data library') return [lib_widget, new_lib] else: - if folders: + if selected_lib: return [lib_widget, folder_widget] else: return [lib_widget] @@ -715,7 +740,7 @@ can_show, hidden_folder_ids = trans.app.security_agent.show_library_item( user, roles, library, actions_to_check ) if can_show: libraries[ library ] = hidden_folder_ids - libui = self.__library_ui(libraries, request, **kwd) + libui = self.__library_ui(trans, libraries, request, **kwd) widgets = widgets + libui widgets = widgets + request.type.request_form.get_widgets( user, request.values.content, **kwd ) return trans.fill_template( '/requests/edit_request.mako',