details: http://www.bx.psu.edu/hg/galaxy/rev/d3abf05d9272 changeset: 2456:d3abf05d9272 user: Greg Von Kuster greg@bx.psu.edu date: Fri Jun 19 11:21:13 2009 -0400 description: Fix for importing history items ( datasets ) that include child datasets into a library.
1 file(s) affected in this change:
lib/galaxy/model/__init__.py
diffs (42 lines):
diff -r 075c0fd5b1d5 -r d3abf05d9272 lib/galaxy/model/__init__.py --- a/lib/galaxy/model/__init__.py Thu Jun 18 12:10:36 2009 -0400 +++ b/lib/galaxy/model/__init__.py Fri Jun 19 11:21:13 2009 -0400 @@ -628,7 +628,7 @@ hda.set_peek() hda.flush() return hda - def to_library_dataset_dataset_association( self, target_folder, replace_dataset=None, parent_id=None ): + def to_library_dataset_dataset_association( self, target_folder, replace_dataset=None, parent_id=None, user=None ): if replace_dataset: # The replace_dataset param ( when not None ) refers to a LibraryDataset that is being replaced with a new version. library_dataset = replace_dataset @@ -637,6 +637,8 @@ # LibraryDataset, and the current user's DefaultUserPermissions will be applied to the associated Dataset. library_dataset = LibraryDataset( folder=target_folder, name=self.name, info=self.info ) library_dataset.flush() + if not user: + user = self.history.user ldda = LibraryDatasetDatasetAssociation( name=self.name, info=self.info, blurb=self.blurb, @@ -649,7 +651,7 @@ deleted=self.deleted, parent_id=parent_id, copied_from_history_dataset_association=self, - user=self.history.user ) + user=user ) ldda.flush() # Permissions must be the same on the LibraryDatasetDatasetAssociation and the associated LibraryDataset # Must set metadata after ldda flushed, as MetadataFiles require ldda.id @@ -660,7 +662,10 @@ library_dataset.library_dataset_dataset_association_id = ldda.id library_dataset.flush() for child in self.children: - child_copy = child.to_library_dataset_dataset_association( target_folder=target_folder, replace_dataset=replace_dataset, parent_id=ldda.id ) + child_copy = child.to_library_dataset_dataset_association( target_folder=target_folder, + replace_dataset=replace_dataset, + parent_id=ldda.id, + user=ldda.user ) if not self.datatype.copy_safe_peek: # In some instances peek relies on dataset_id, i.e. gmaj.zip for viewing MAFs ldda.set_peek()