Hello,
Are there any existing Galaxy wrappers for the command line
tools (or the online services) TMHMM v2.0 (Trans-Membrane
Hidden Markov Model) and SignalP v3.0 (Signal Peptide)?
http://www.cbs.dtu.dk/cgi-bin/nph-sw_request?tmhmm
http://www.cbs.dtu.dk/cgi-bin/nph-sw_request?signalp
Both take protein FASTA files for input, but there are a few
extra considerations here like limiting each call to TMHMM
to 4000 proteins (IIRC), the possibility to split the job in order
to take advantage of multiple cores, and parsing the output
into a Galaxy friendly tabular form.
Thanks,
Peter