Here a guess (not necessarily correct):
You have some configuration problem, and then there's also some Galaxy bug in the error-handling code.
details: The exception is thrown from library_common.py:1158 . This block is already an error-handling block, because on line 1147 there's a check for "response_code != 200" .
This means that by now, your upload has failed, and galaxy tries to report the error for you, but the variable "message" is None, and so it can't generate the actual error message, and crashes.
If you feel adventurous, add the following line at line 1147 (BEFORE the "if response_code != 200", with the same indentation as the "if"): === log.exception( "!!! response_code = %d" % ( response_code ) ) ===
This will show you (in the log file/STDOUT) what is the numeric value of "response_code", and you (or the galaxy team?) can try and pin-point the error-handling path that doesn't update the variable "message".
-gordon
juan perin wrote, On 07/02/2010 10:22 AM:
In my latest pull from the galaxy update server, something has caused my instance to act up. I'm getting an error when trying to upload data into libraries. This is the text based error:
URL: http://variome.chop.edu:8082/library_common/upload_library_dataset File '/home/perin/galaxy_dist2/eggs/WebError-0.8a-py2.6.egg/weberror/evalexception/middleware.py', line 364 in respond app_iter = self.application(environ, detect_start_response) File '/home/perin/galaxy_dist2/eggs/Paste-1.6-py2.6.egg/paste/debug/prints.py', line 98 in __call__ environ, self.app) File '/home/perin/galaxy_dist2/eggs/Paste-1.6-py2.6.egg/paste/wsgilib.py', line 539 in intercept_output app_iter = application(environ, replacement_start_response) File '/home/perin/galaxy_dist2/eggs/Paste-1.6-py2.6.egg/paste/recursive.py', line 80 in __call__ return self.application(environ, start_response) File '/home/perin/galaxy_dist2/eggs/Paste-1.6-py2.6.egg/paste/httpexceptions.py', line 632 in __call__ return self.application(environ, start_response) File '/home/perin/galaxy_dist2/lib/galaxy/web/framework/base.py', line 145 in __call__ body = method( trans, **kwargs ) File '/home/perin/galaxy_dist2/lib/galaxy/web/controllers/library_common.py', line 978 in upload_library_dataset **kwd ) File '/home/perin/galaxy_dist2/lib/galaxy/web/controllers/library_common.py', line 1158 in upload_dataset message=util.sanitize_text( message ), File '/home/perin/galaxy_dist2/lib/galaxy/util/__init__.py', line 138 in sanitize_text for c in text: TypeError: 'NoneType' object is not iterable
Strangely, the data gets queued up anyway, if you go back to the library, and you can even see the first few lines of the file in the preview, but it remains queued and never fully becomes available. Not sure what's going on, so was hoping for any suggestions. Thanks.
Juan
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