This looks to be a guppy bug that has now been fixed ( http://sourceforge.net/p/guppy-pe/bugs/10/) so we'll update the egg from our end, thanks!
For now, you can either build your own guppy 0.1.9+ egg to fix it or disable use_memdump in your universe (to skip it completely). Unless you're actually using the memdump capabilities, I'd recommend having it off for performance reasons anyway.
-Dannon
On Mon, Aug 12, 2013 at 7:56 AM, Sarah Maman sarah.maman@toulouse.inra.frwrote:
Dear all,
When I try to install last sources of Galaxy(% hg clone https://bitbucket.org/galaxy/**galaxy-dist/https://bitbucket.org/galaxy/galaxy-dist/) , I have this error :
Error at initialization of module heapycTraceback (most recent call last): File "/usr/local/bioinfo/src/**galaxy-dev/galaxy-dist/lib/** galaxy/webapps/galaxy/**buildapp.py", line 35, in app_factory app = UniverseApplication( global_conf = global_conf, **kwargs ) File "/usr/local/bioinfo/src/**galaxy-dev/galaxy-dist/lib/**galaxy/app.py", line 157, in __init__ self.memdump = memdump.Memdump() File "/usr/local/bioinfo/src/**galaxy-dev/galaxy-dist/lib/**galaxy/util/memdump.py", line 24, in __init__ self.heapy = guppy.hpy() File "/usr/local/bioinfo/src/**galaxy-dev/galaxy-dist/eggs/** guppy-0.1.8-py2.7-linux-x86_**64-ucs2.egg/guppy/__init__.py"**, line 35, in hpy return r.guppy.heapy.Use File "/usr/local/bioinfo/src/**galaxy-dev/galaxy-dist/eggs/** guppy-0.1.8-py2.7-linux-x86_**64-ucs2.egg/guppy/etc/Glue.py"**, line 44, in __getattr__ return self._share.getattr(self, name) File "/usr/local/bioinfo/src/**galaxy-dev/galaxy-dist/eggs/** guppy-0.1.8-py2.7-linux-x86_**64-ucs2.egg/guppy/etc/Glue.py"**, line 187, in getattr d = self.getattr2(inter, cache, owner, name) File "/usr/local/bioinfo/src/**galaxy-dev/galaxy-dist/eggs/** guppy-0.1.8-py2.7-linux-x86_**64-ucs2.egg/guppy/etc/Glue.py"**, line 202, in getattr2 x = self.getattr_package(inter, name) File "/usr/local/bioinfo/src/**galaxy-dev/galaxy-dist/eggs/** guppy-0.1.8-py2.7-linux-x86_**64-ucs2.egg/guppy/etc/Glue.py"**, line 250, in getattr_package x = self.makeModule(x, name) File "/usr/local/bioinfo/src/**galaxy-dev/galaxy-dist/eggs/** guppy-0.1.8-py2.7-linux-x86_**64-ucs2.egg/guppy/etc/Glue.py"**, line 310, in makeModule return Share(module, self, module.__name__, Clamp) File "/usr/local/bioinfo/src/**galaxy-dev/galaxy-dist/eggs/** guppy-0.1.8-py2.7-linux-x86_**64-ucs2.egg/guppy/etc/Glue.py"**, line 176, in __init__ getattr(inter, name) File "/usr/local/bioinfo/src/**galaxy-dev/galaxy-dist/eggs/** guppy-0.1.8-py2.7-linux-x86_**64-ucs2.egg/guppy/etc/Glue.py"**, line 44, in __getattr__ return self._share.getattr(self, name) File "/usr/local/bioinfo/src/**galaxy-dev/galaxy-dist/eggs/** guppy-0.1.8-py2.7-linux-x86_**64-ucs2.egg/guppy/etc/Glue.py"**, line 187, in getattr d = self.getattr2(inter, cache, owner, name) File "/usr/local/bioinfo/src/**galaxy-dev/galaxy-dist/eggs/** guppy-0.1.8-py2.7-linux-x86_**64-ucs2.egg/guppy/etc/Glue.py"**, line 204, in getattr2 x = self.getattr3(inter, name) File "/usr/local/bioinfo/src/**galaxy-dev/galaxy-dist/eggs/** guppy-0.1.8-py2.7-linux-x86_**64-ucs2.egg/guppy/etc/Glue.py"**, line 272, in getattr3 pa = getattr(pa, at) File "/usr/local/bioinfo/src/**galaxy-dev/galaxy-dist/eggs/** guppy-0.1.8-py2.7-linux-x86_**64-ucs2.egg/guppy/etc/Glue.py"**, line 44, in __getattr__ return self._share.getattr(self, name) File "/usr/local/bioinfo/src/**galaxy-dev/galaxy-dist/eggs/** guppy-0.1.8-py2.7-linux-x86_**64-ucs2.egg/guppy/etc/Glue.py"**, line 187, in getattr d = self.getattr2(inter, cache, owner, name) File "/usr/local/bioinfo/src/**galaxy-dev/galaxy-dist/eggs/** guppy-0.1.8-py2.7-linux-x86_**64-ucs2.egg/guppy/etc/Glue.py"**, line 202, in getattr2 x = self.getattr_package(inter, name) File "/usr/local/bioinfo/src/**galaxy-dev/galaxy-dist/eggs/** guppy-0.1.8-py2.7-linux-x86_**64-ucs2.egg/guppy/etc/Glue.py"**, line 239, in getattr_package x = __import__(self.makeName(name)**, globals(), locals()) File "/usr/local/bioinfo/src/**galaxy-dev/galaxy-dist/eggs/** guppy-0.1.8-py2.7-linux-x86_**64-ucs2.egg/guppy/heapy/View.**py", line 556, in <module> prime_builtin_types() File "/usr/local/bioinfo/src/**galaxy-dev/galaxy-dist/eggs/** guppy-0.1.8-py2.7-linux-x86_**64-ucs2.egg/guppy/heapy/View.**py", line 539, in prime_builtin_types import guppy.heapy.heapyc File "/usr/local/bioinfo/src/**galaxy-dev/galaxy-dist/eggs/** guppy-0.1.8-py2.7-linux-x86_**64-ucs2.egg/guppy/sets/__init_**_.py", line 3, in <module> from setsc import BitSet # base bitset type ImportError: /usr/local/bioinfo/src/galaxy-**dev/galaxy-dist/eggs/guppy-0. **1.8-py2.7-linux-x86_64-ucs2.**egg/guppy/sets/setsc.so: undefined symbol: _PyLong_AsScaledDouble
Coul you please help me ?
Thanks in advance, Sarah
-- --*-- Sarah Maman INRA - LGC - SIGENAE http://www.sigenae.org/ Chemin de Borde-Rouge - Auzeville - BP 52627 31326 Castanet-Tolosan cedex - FRANCE Tel: +33(0)5.61.28.57.08 Fax: +33(0)5.61.28.57.53 --*--
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