details: http://www.bx.psu.edu/hg/galaxy/rev/cabfdc9dea12 changeset: 1728:cabfdc9dea12 user: Nate Coraor nate@bx.psu.edu date: Fri Jan 30 11:37:51 2009 -0500 description: Fix annotation profiler interpreter to be python, not python2.4
1 file(s) affected in this change:
tools/annotation_profiler/annotation_profiler.xml
diffs (11 lines):
diff -r e1e119b0bd17 -r cabfdc9dea12 tools/annotation_profiler/annotation_profiler.xml --- a/tools/annotation_profiler/annotation_profiler.xml Fri Jan 30 11:37:18 2009 -0500 +++ b/tools/annotation_profiler/annotation_profiler.xml Fri Jan 30 11:37:51 2009 -0500 @@ -1,6 +1,6 @@ <tool id="Annotation_Profiler_0" name="Profile Annotations" Version="1.0.0"> <description>for a set of genomic intervals</description> - <command interpreter="python2.4">annotation_profiler_for_interval.py -i $input1 -c ${input1.metadata.chromCol} -s ${input1.metadata.startCol} -e ${input1.metadata.endCol} -o $out_file1 $keep_empty -p /depot/data2/galaxy/annotation_profiler/$dbkey $summary -l ${GALAXY_DATA_INDEX_DIR}/shared/ucsc/chrom/${dbkey}.len -b 3 -t $table_names</command> + <command interpreter="python">annotation_profiler_for_interval.py -i $input1 -c ${input1.metadata.chromCol} -s ${input1.metadata.startCol} -e ${input1.metadata.endCol} -o $out_file1 $keep_empty -p /depot/data2/galaxy/annotation_profiler/$dbkey $summary -l ${GALAXY_DATA_INDEX_DIR}/shared/ucsc/chrom/${dbkey}.len -b 3 -t $table_names</command> <inputs> <param format="interval" name="input1" type="data" label="Choose Intervals"> <validator type="dataset_metadata_in_file" filename="annotation_profiler_valid_builds.txt" metadata_name="dbkey" metadata_column="0" message="Profiling is not currently available for this species."/>