Dear Galaxy team,
I am having a problem running Galaxy/ODoSE. In the step "Extract & categorize orthologs", I selected the option "Output accessory orthologous genes" but it didn't work and didn't output any file. The stdout contains multiple warnings:
...
WARNING 15:18:06 select_taxa.select_genomes_by_ids:33 Could not find genome with BioProject ID 11 in complete genomes table WARNING 15:18:06 select_taxa.select_genomes_by_ids:33 Could not find genome with BioProject ID 10 in complete genomes table WARNING 15:18:06 select_taxa.select_genomes_by_ids:33 Could not find genome with BioProject ID 14 in complete genomes table WARNING 15:18:08 __init__.get_most_recent_gene_name:186 Could not retrieve gene name annotation based on date; returning first gene name annotation instead WARNING 15:18:08 __init__.get_most_recent_gene_name:186 Could not retrieve gene name annotation based on date; returning first gene name annotation instead WARNING 15:18:08 __init__.get_most_recent_gene_name:186 Could not retrieve gene name annotation based on date; returning first gene name annotation instead
...
How can I solve this problem? Thank you in advance!
Best Regards,
Sérgio