Hi Carl,
Yes, the problem is fixed. Thank you very much. Just in
case, I see that galaxy-release-15.05 is now free of this
bug but galaxy-release-15.07 has this bug again.
Cheers,
Ata
On Wednesday 2015-07-15 07:54, Carl Eberhard wrote:
Date: Wed, 15 Jul 2015 07:54:05
From: Carl Eberhard <carlfeberhard(a)gmail.com>
To: Ata Roudgar <aroudgar(a)sfu.ca>
Cc: Galaxy Dev List <galaxy-dev(a)lists.galaxyproject.org>,
Martin Siegert <siegert(a)sfu.ca>, Matthew Laird <lairdm(a)sfu.ca>,
Franklin Bristow <franklin.bristow(a)phac-aspc.gc.ca>
Subject: Re: [galaxy-dev] Possible bug on
"Create a collection of paired datasets"
Hi, Ata Roudgar
It is indeed a bug. Thank you very much for the excellent and *helpful* report!
We now have a fix for this on the release_15.05 branch of the github repository:
https://github.com/galaxyproject/galaxy/commit/13a40b3ef206f8662a49dfd06f...
It should fix the issue but please let us know if it doesn't. Sorry for the trouble.
On Fri, Jul 3, 2015 at 3:46 PM, Ata Roudgar <aroudgar(a)sfu.ca> wrote:
Hi,
I am a computer cluster admin and I am trying to install galaxy on our cluster. I
used
galaxy-release_15.05 and because we need to serve Galaxy at a sub directory, e.g.
irida-galaxy I modified the options prefix and cookie_path in the galaxy
configuration file
as follow:
prefix = /irida-galaxy
filter-with = proxy-prefix
cookie_path = /irida-galaxy
We use apache as an interface with the Following configuration:
<Proxy
http://localhost:9010>
Order deny,allow
Allow from all
</Proxy>
RewriteRule ^/irida-galaxy$ /irida-galaxy/ [R]
RewriteRule ^/irida-galaxy/static/style/(.*)
/home/irida/galaxy-dist/static/june_2007_style/blue/$1 [L]
RewriteRule ^/irida-galaxy/static/scripts/(.*)
/home/irida/galaxy-dist/static/scripts/packed/$1 [L]
RewriteRule ^/irida-galaxy/static/(.*) /home/irida/galaxy-dist/static/$1 [L]
#RewriteRule ^/irida-galaxy/favicon.ico /home/irida/galaxy-dist/static/favicon.ico
[L]
RewriteRule ^/irida-galaxy/robots.txt /home/irida/galaxy-dist/static/robots.txt [L]
RewriteRule ^/irida-galaxy(.*)
http://localhost:9010$1 [P]
Everything works fairly good. Now I want to create a Dataset Pairs. first I uploads
some
fastaq files, e.g.,
a_1.fastaq
a_2.fastaq
b_1.fastaq
b_2.fastaq
c_1.fastaq
c_2.fastaq
then I choose: "Build List of Dataset Pairs" (See Fig-1 attached)
There is a window appears on my screen with the title: Create a collection of
paired
datasets. Now I am able to choose a name and save the paired collection. However,
once I
click on "Create list" buttons I receive a error message on top of the
windows:
"An error occurred While creating this collection: Not found
See Fig-2 attached. To be able to search the cause of error I turn on the
"Browser Consul"
on my web browser and notice that the error is related to the following web form
post:
https://newrobson.westgrid.ca:8444/api/histories/4936629215c25989/content...
Which makes sense because such address do not exist. The address should be
https://newrobson.westgrid.ca:8444/irida-galaxy/api/histories/4936629215c...
tions
So the prefix (irida-galaxy) is missing before
/api/histories...../dataset_collection
Is it a bug or am I missing something?
Please note that such error does not appear when I do not use prefix in my galaxy
configration.
Thanks for your time,
Cheers,
Ata
----
Ata Roudgar
Research Computing
WestGrid Site
IT Services
Simon Fraser University
Burnaby, British Columbia
Canada V5A 1S6
phone: 778 782-8860
fax: 778 782-4242
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----
Ata Roudgar
Research Computing
WestGrid Site
IT Services
Simon Fraser University
Burnaby, British Columbia
Canada V5A 1S6
phone: 778 782-8860
fax: 778 782-4242