On Feb 29, 2012, at 11:50 AM, Michael Burrell (TOC) wrote:
Good evening all,
I am seeing the following issue when attempting to start galaxy.
Traceback (most recent call last):
File "./scripts/paster.py", line 34, in <module>
command.run()
File
"/home/home/galaxy/software/galaxy-central/eggs/PasteScript-1.7.3-py2.6.egg/paste/script/command.py",
line 84, in run
invoke(command, command_name, options, args[1:])
File
"/home/home/galaxy/software/galaxy-central/eggs/PasteScript-1.7.3-py2.6.egg/paste/script/command.py",
line 123, in invoke
exit_code = runner.run(args)
File
"/home/home/galaxy/software/galaxy-central/eggs/PasteScript-1.7.3-py2.6.egg/paste/script/command.py",
line 218, in run
result = self.command()
File
"/home/home/galaxy/software/galaxy-central/eggs/PasteScript-1.7.3-py2.6.egg/paste/script/serve.py",
line 276, in command
relative_to=base, global_conf=vars)
File
"/home/home/galaxy/software/galaxy-central/eggs/PasteScript-1.7.3-py2.6.egg/paste/script/serve.py",
line 313, in loadapp
**kw)
File
"/home/home/galaxy/software/galaxy-central/eggs/PasteDeploy-1.3.3-py2.6.egg/paste/deploy/loadwsgi.py",
line 204, in loadapp
return loadobj(APP, uri, name=name, **kw)
File
"/home/home/galaxy/software/galaxy-central/eggs/PasteDeploy-1.3.3-py2.6.egg/paste/deploy/loadwsgi.py",
line 224, in loadobj
global_conf=global_conf)
File
"/home/home/galaxy/software/galaxy-central/eggs/PasteDeploy-1.3.3-py2.6.egg/paste/deploy/loadwsgi.py",
line 248, in loadcontext
global_conf=global_conf)
File
"/home/home/galaxy/software/galaxy-central/eggs/PasteDeploy-1.3.3-py2.6.egg/paste/deploy/loadwsgi.py",
line 278, in _loadconfig
return loader.get_context(object_type, name, global_conf)
File
"/home/home/galaxy/software/galaxy-central/eggs/PasteDeploy-1.3.3-py2.6.egg/paste/deploy/loadwsgi.py",
line 413, in get_context
section)
File
"/home/home/galaxy/software/galaxy-central/eggs/PasteDeploy-1.3.3-py2.6.egg/paste/deploy/loadwsgi.py",
line 458, in _context_from_explicit
value = import_string(found_expr)
File
"/home/home/galaxy/software/galaxy-central/eggs/PasteDeploy-1.3.3-py2.6.egg/paste/deploy/loadwsgi.py",
line 18, in import_string
return pkg_resources.EntryPoint.parse("x="+s).load(False)
File "/home/home/galaxy/software/galaxy-central/lib/pkg_resources.py", line
1954, in load
entry = __import__(self.module_name, globals(),globals(), ['__name__'])
File "/home/home/galaxy/software/galaxy-central/lib/galaxy/web/buildapp.py",
line 19, in <module>
from galaxy import config, jobs, util, tools
File "/home/home/galaxy/software/galaxy-central/lib/galaxy/jobs/__init__.py",
line 4, in <module>
from galaxy import util, model
EOFError: EOF read where object expected
Removing PID file paster.pid
Would this suggest that the eggs are bad? What would be the best way to remedy the
situation
Hi Michael,
I think your eggs are okay, the occurrence of "egg" in the traceback is simply
because the problem occurs beneath a call in the PasteDeploy egg. I think your copy of
the source may be corrupt. Could you verify that things are okay by using 'hg
status'? I'd also suggest finding and removing all .pyc files and letting Python
recreate them.
--nate
Thanks
Michael.
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