never mind. See that emma is lacking the wrapper for galaxy in EMBOSS.
________________________________________ Van: Bossers, Alex Verzonden: donderdag 11 november 2010 20:27 Aan: Peter CC: galaxy-dev@lists.bx.psu.edu Onderwerp: RE: [galaxy-dev] Classic alignment tools (ClustalW, MUSCLE, T-Coffee, etc)
Peter, actually just found it. In the EMBOSS suite its called emma (for ClustalW) http://emboss.sourceforge.net/apps/release/6.3/emboss/apps/emma.html
EMBOSS suite is default in galaxy present but locally you need to enable the wrappers/tools first.
Alex
________________________________________ Van: galaxy-dev-bounces@lists.bx.psu.edu [galaxy-dev-bounces@lists.bx.psu.edu] namens Peter [biopython@maubp.freeserve.co.uk] Verzonden: donderdag 11 november 2010 18:19 Aan: Hans-Rudolf Hotz CC: galaxy-dev@lists.bx.psu.edu Onderwerp: Re: [galaxy-dev] Classic alignment tools (ClustalW, MUSCLE, T-Coffee, etc)
On Thu, Nov 11, 2010 at 5:08 PM, Hans-Rudolf Hotz hrh@fmi.ch wrote:
Peter
A while ago, I started to write a simple tool definition file for 'clustalw2' (see attachment). There are still a lot of options missing, but feel free to use it as a starting point.
Hans
Thanks Hans.
Are there any others who've looked at this sort of thing?
Peter _______________________________________________ galaxy-dev mailing list galaxy-dev@lists.bx.psu.edu http://lists.bx.psu.edu/listinfo/galaxy-dev