Re: [galaxy-dev] list collection output - format set from input
Hi Alexander,
If this wasn't a collection, I would expect format_source to work
(possibly also using metadata_source="fastq_input1"), so perhaps
this is a bug - John?
Peter
P.S. Your help caption and output label both say FASTQ, but the
input also allows FASTA input. Typo?
On Thu, Jun 25, 2015 at 2:39 AM, Alexander Vowinkel
<vowinkel.alexander(a)gmail.com> wrote:
Hi,
I have an input, that can be fasta,fastqsanger,fastqillumina:
<param name="fastq_input1" type="data"
format="fasta,fastqsanger,fastqillumina" label="Select the fastq
file"
help="Specify fastq file with reads"/>
I have multiple outputfiles - bundled in a list collection:
<collection name="split_output" type="list"
label="@OUTPUT_NAME_PREFIX@ on
${on_string} (Fastq Collection)" format_source="fastq_input1">
<discover_datasets pattern="__name_and_ext__"
directory="splits" />
</collection>
The format_source parameter doesn't work - the files in the list (extension
fq) are of format "fq"
How can I make it possible that they are fasta,fastqsanger,fastqillumina
depending on fastq_input1?
Thanks,
Alexander
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