What Bjoern said - unless you meant the older bowtie1 wrappers. Those
have not been updated - I think we decision was made at Penn State to
focus on bowtie2 - but if people are still interested in enhancing the
bowtie1 wrappers I think a PR would be welcome. There have been some
other relatively recent bowtie1 PRs (e.g. from Nicola
).
-John
On Thu, Jun 25, 2015 at 3:46 AM, Bjoern Gruening
<bjoern.gruening(a)gmail.com> wrote:
Hi Ryan,
latest wrappers are here:
https://github.com/galaxyproject/tools-devteam/tree/master/tools/bowtie2
And a PR would be great!
But as far as I can see this is already implemented and you can choose as
option `Paired-end Dataset Collection`, isn't it?
Ciao,
Bjoern
On 24.06.2015 20:02, Ryan G wrote:
Hi all - It looks like bowtie's wrapper is working incorrectly for a list of
dataset pairs. Its expecting all the forward reads in one dataset list and
the reverse reads in a separate dataset list.
Instead, I have a list of dataset pairs (for paired-end data). This cannot
be provided to bowtie as input. If I correct this, should I create a pull
request for it? Alternatively, does someone already have a corrected
version of this?
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