Re: [galaxy-dev] Tool runners don't "listen" to settings in [galaxy:tool_runners]

On Wed, Dec 5, 2012 at 10:56 PM, Nate Coraor nate@bx.psu.edu wrote:

Hi Thon,

I just committed a fix for this in 75a97c971d36 that will be available in our next distribution release. It will also match from most to least specific so you can define all of:

toolshed.g2.bx.psu.edu/repos/devteam/bwa_wrappers/bwa_wrapper/1.2.3 = foo:// toolshed.g2.bx.psu.edu/repos/devteam/bwa_wrappers/bwa_wrapper = bar:// bwa_wrapper = baz://

In this example:

• version 1.2.3 of the bwa wrapper installed from the toolshed would use foo://
• all other versions installed from the toolshed would use bar://
• any tool with <tool id="bwa_wrapper">, regardless of how it's installed (from the toolshed or directly added to tool_conf.xml) would use baz://

Only the most specific match will be used if there are multiple matches (as in the example).

--nate

Excellent - that looks much easier to work with :)

Thanks,

Peter