I would say it is a ways off yet, it doesn't even validate all proper XML yet, let alone have proper documentation tags. I was hoping adding the validation feature to planemo would spur some development on it, but it hasn't happened yet. Some people are trying it out though (https://github.com/galaxyproject/planemo/issues/298). Maybe the next mini hackathon/contribution event we organize should be on fixing that up. It is a really pretty easy way to contribute Galaxy IMO.
-John
On Wed, Sep 9, 2015 at 9:13 PM, Peter Cock p.j.a.cock@googlemail.com wrote:
Thanks John,
I like that plan - is the XSD at the point where we can declare it in Galaxy Tool definition XML files s & validate them (via planemo or otherwise)?
Peter
On Wed, Sep 9, 2015 at 7:03 PM, John Chilton jmchilton@gmail.com wrote:
Updated the wiki with this information. https://wiki.galaxyproject.org/Admin/Tools/ToolConfigSyntax#A.3Cversion_comm....
We got to get away from using the wiki page and start documenting this stuff in the XSD (https://github.com/JeanFred/Galaxy-XSD) directly and build the documentation from that. Maybe Eric or Björn will find a couple free hours some day to get that wiki information ported over :).
Thanks for the catch Peter, John
On Tue, Sep 1, 2015 at 11:43 AM, Peter Cock p.j.a.cock@googlemail.com wrote:
Hello all,
I've just noticed that dollar signs for accessing environment variables must be escaped in the XML <command> tag, but must not be escaped in the <version_command> tag:
https://github.com/peterjc/pico_galaxy/commit/4613a08139a3dfa07c3b0411ac8a91...
I presume this is because <command> is parsed as a Cheetah template where dollar means a Python variable (like the input and output parameters), while for the <version_command> this does not happen?
Has anyone else been caught out by this? Is it worth adding a note about this to the wiki? https://wiki.galaxyproject.org/Admin/Tools/ToolConfigSyntax
Regards,
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