There is a mismatch between the options Galaxy is passing to infoseq (- version), and what infoseq wants (-seqversion). This breaks the tool.
Clarification: I see the -version/-seqversion change to infoseq was made in EMBOSS 6.2.0. I'm still wondering which version I should be using with Galaxy. Maybe 6.1.0 from Jul 2009 is OK? Or should we just fix Galaxy to use the latest and greatest EMBOSS? cheers, Simon PS: Apologies for the crass disclaimer ======================================================================= Attention: The information contained in this message and/or attachments from AgResearch Limited is intended only for the persons or entities to which it is addressed and may contain confidential and/or privileged material. Any review, retransmission, dissemination or other use of, or taking of any action in reliance upon, this information by persons or entities other than the intended recipients is prohibited by AgResearch Limited. If you have received this message in error, please notify the sender immediately. =======================================================================