Dear list,
When running Galaxy/Cloudman on Amazon (on Ubuntu 12.04), I run into the following:
- I start a job with <parallelism> in the tool.xml file. - Since I have use_tasked_jobs=True in universe_wsgi.ini, the job is split and divided over the instances on EC2 - I change my mind, and click on the delete button in the Galaxy UI. This removes the job from the UI. - I log in to an instance running my job, and see that it is still running (both its wrapper and the tool program). It keeps running, keeping my instances busy. - When tasks of this job finish (I assume), it is reported to galaxy, and my logfile says things like:
galaxy.jobs DEBUG 2012-08-29 12:42:08,239 task 319 for job 25 ended galaxy.jobs DEBUG 2012-08-29 12:42:08,265 The tool did not define exit code or stdio handling; checking stderr for success galaxy.jobs DEBUG 2012-08-29 12:42:08,282 task 319 ended
So I wonder if the default behaviour when deleting jobs in the UI is that they keep running but hidden, or is there something wrong in my config? Is there a way to change this with a setting?
cheers, jorrit boekel