Hi Kostas,
look in ~/lib/galaxy/util/__init__.py:
# characters that are allowed but need to be escaped mapped_chars = { '>' :'__gt__', '<' :'__lt__', "'" :'__sq__', '"' :'__dq__', '[' :'__ob__', ']' :'__cb__', '{' :'__oc__', '}' :'__cc__', '@' : '__at__', '\n' : '__cn__', '\r' : '__cr__', '\t' : '__tc__' }
On Mar 11, 2011, at 6:11 AM, Kostas Karasavvas wrote:
Hi all!
I found the following in the mailing list archives. Does anyone know where I can find a complete list of the sanitization taking place? '>' __gt__ '@' __at__ etc.
Thank you, Kostas
It's worth noting that command line parameters are sanitized for security purposes, so passing them unsanitized should only be done in controlled environments where security is not a concern. Otherwise, parameters should be restored to their original values by the tool or a wrapper around the tool.
--nate
On Oct 5, 2010, at 10:10, Jelle Scholtalbers <j.scholtalbers at gmail.com> wrote:
Hi,
take a look at <options sanitize="False" /> as used also in tools/fastq/fastq_manipulation.xml
Cheers, Jelle
On Tue, Oct 5, 2010 at 12:39 AM, Zhe Chen <zhe at lanl.gov> wrote:
Hi,
I was implementing a galaxy tool. A problem occurs when my input contains ">", linebreak, galaxy seems traslate them to __gt__, __cr____cn__. Is there a way to stop this translation?
Or suggestion to fix this problem?
Thanks
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