Hello, I found this shed_tool_conf.xml ( https://raw.githubusercontent.com/galaxyproject/usegalaxy-playbook/c55aa0428...) file on use galaxy-playbook. I copied information for snpSift_filter out of the xml file and pasted it to the command below:
* $ python /Users/lorencm/galaxy/scripts/api/install_tool_shed_repositories.py -a 4bb8f6eb85efca463d2e60b9704d6caf -l http://localhost:8080 http://localhost:8080 -n snpSift_filter -o pcingola -r c052639fa666 --panel-section-name 'snpEff' --repository-deps --tool-deps -u http://toolshed.g2.bx.psu.edu/ http://toolshed.g2.bx.psu.edu/*
However, I received the following error massage:
* HTTP Error 400: Bad Request* * {"traceback": "Traceback (most recent call last):\n File "/Users/lorencm/galaxy/lib/galaxy/web/framework/decorators.py", line 251, in decorator\n rval = func( self, trans, *args, **kwargs)\n File "/Users/lorencm/galaxy/lib/galaxy/webapps/galaxy/api/tool_shed_repositories.py", line 246, in install_repository_revision\n payload )\n File "/Users/lorencm/galaxy/lib/tool_shed/galaxy_install/install_manager.py", line 704, in install\n changeset_revision )\n File "/Users/lorencm/galaxy/lib/tool_shed/galaxy_install/install_manager.py", line 505, in __get_install_info_from_tool_shed\n raise exceptions.RequestParameterInvalidException( invalid_parameter_message )\nRequestParameterInvalidException: No information is available for the requested repository revision.\nOne or more of the following parameter values is likely invalid:\ntool_shed_url: http://toolshed.g2.bx.psu.edu/%5Cnname http://toolshed.g2.bx.psu.edu/\nname: snpSift_filter\nowner: pcingola\nchangeset_revision: c052639fa666\n\n", "err_msg": "No information is available for *
I also posted it on Github ( https://github.com/galaxyproject/usegalaxy-playbook/issues/8)
How is it possible to fix the problem?
Thank you in advance.
Mic