Hi all,
Does anyone know what might have introduced this problem running galaxy-dist when using the task splitting functionality? I'm using the latest code from the default branch, changeset: 7027:f6e790d94282
galaxy.jobs.manager DEBUG 2012-04-17 13:55:03,610 (4) Job assigned to handler 'main' 127.0.0.1 - - [17/Apr/2012:13:55:06 +0100] "POST /root/history_item_updates HTTP/1.1" 200 - "http://127.0.0.1:8081/history" "Mozilla/5.0 (X11; U; Linux x86_64; en-US; rv:1.9.2.18) Gecko/20110622 CentOS/3.6-1.el5.centos Firefox/3.6.18" galaxy.jobs DEBUG 2012-04-17 13:55:08,710 (4) Working directory for job is: /mnt/galaxy/galaxy-central/database/job_working_directory/000/4 galaxy.jobs.handler DEBUG 2012-04-17 13:55:08,711 dispatching job 4 to tasks runner galaxy.jobs.handler INFO 2012-04-17 13:55:08,845 (4) Job dispatched galaxy.datatypes.sequence DEBUG 2012-04-17 13:55:09,470 Split /mnt/galaxy/galaxy-central/database/files/000/dataset_2.dat into 4 parts... galaxy.datatypes.sequence DEBUG 2012-04-17 13:55:09,470 Attemping to split FASTA file /mnt/galaxy/galaxy-central/database/files/000/dataset_2.dat into chunks of 1 sequences galaxy.datatypes.sequence DEBUG 2012-04-17 13:55:09,471 Writing /mnt/galaxy/galaxy-central/database/files/000/dataset_2.dat part to /mnt/galaxy/galaxy-central/database/job_working_directory/000/4/task_0/dataset_2.dat galaxy.datatypes.sequence DEBUG 2012-04-17 13:55:09,472 Writing /mnt/galaxy/galaxy-central/database/files/000/dataset_2.dat part to /mnt/galaxy/galaxy-central/database/job_working_directory/000/4/task_1/dataset_2.dat galaxy.jobs.splitters.multi DEBUG 2012-04-17 13:55:09,472 do_split created 2 parts galaxy.jobs DEBUG 2012-04-17 13:55:09,506 (4) Working directory for job is: /mnt/galaxy/galaxy-central/database/job_working_directory/000/4 galaxy.jobs.runners.tasks ERROR 2012-04-17 13:55:09,784 failure running job 4 Traceback (most recent call last): File "/mnt/galaxy/galaxy-central/lib/galaxy/jobs/runners/tasks.py", line 86, in run_job self.app.job_manager.dispatcher.put(tw) AttributeError: 'JobManager' object has no attribute 'dispatcher'
Thanks,
Peter