Your are joining GCC? Cool!
Looking forward to see you there! Bjoern
Am 01.06.2017 um 21:25 schrieb David Kovalic:
Bjoern,
Thanks so much, I'll check it out.
If I can't figure this out I am sure I can ask around in Montpellier at GCC'17! I am looking forward to the meeting and being able to visit Montpellier for the first time ever
The help is greatly appreciated.
David
On Thu, Jun 1, 2017 2:21 PM, Björn Grüning bjoern.gruening@gmail.com mailto:bjoern.gruening@gmail.com wrote:
__ HI David, have a look at https://galaxyproject.org/admin/config/jobs/ and this config file: https://github.com/galaxyproject/galaxy/blob/dev/config/job_resource_params_conf.xml.sample and here: https://github.com/galaxyproject/galaxy/blob/dev/config/job_conf.xml.sample_advanced#L791 I couldn't find more information, hope this gets you started! Cheers, Bjoern Am 01.06.2017 um 20:48 schrieb David Kovalic: > Bjoern, > > Thanks for the response. > > I agree with the first approach (admin control of the per tool > environment). Do you know… are there docs or similar resources you could > point me to that describe how to achieve this? > > Thanks again, > > David > > > > On Sun, May 28, 2017 4:41 AM, Björn Grüning bjoern.gruening@gmail.com > <mailto:bjoern.gruening@gmail.com> wrote: > > __ > > Hi David, > > > this is possible via the GALAXY_SLOTS mechanism. An admin can give every > > tool it's own environment and can set GALAXY_SLOTS dynamically. > > A user can not do this, as this is highly dependent on the node this > > tool will run and normally a user does not know about this. > > > However, if you really want to offer this to a user, Galaxy also offers > > to enable this option per tool level and will add additional parameter > > fields to set GALAXY_SLOTS as a user. > > > Cheers, > > Bjoern > > > Am 26.05.2017 um 20:23 schrieb David Kovalic: > > > Hi, > > > > > > Is it possible, and if so how, to run the galaxy devteam > > > (version 546ada4a9f43) of bwa_mem with the "-t" option and a value >1? > > > > > > "-t INT number of threads [1]" > > > > > > > > > This would be quite useful, and used, for accelerating single bwa > mem jobs. > > > > > > Thanks, > > > > > > David > > > > > > > > > > > > ___________________________________________________________ > > > Please keep all replies on the list by using "reply all" > > > in your mail client. To manage your subscriptions to this > > > and other Galaxy lists, please use the interface at: > > > https://lists.galaxyproject.org/ > > > > > > To search Galaxy mailing lists use the unified search at: > > > http://galaxyproject.org/search/ > > > > >