Running jobs as the "real" user is not available with the PBS job runner - one has to use the DRMAA interface to submit jobs as the real user.
I have created a Trello card to add this functionality: https://trello.com/c/OddS8bMP
Would be happy to field pull requests to add this - because I doubt anyone on the core team will be able to get to this anytime soon. Sorry I don't have better news.
-John
On Sun, Jul 20, 2014 at 11:26 PM, Ping Luo luop0812@gmail.com wrote:
I have installed pbs_python module on our cluster to interface Galaxy with TORQUE. I am able to submit and run jobs on our cluster as the Galaxy user. I need to run Galaxy jobs as the real user. The instruction in the user guide is for DRMAA interface. How can I configure running jobs as real user for TORQUE?
thank,
Ping
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