The latest development release of Galaxy which planemo targets by default requires virtualenv to be available. Can you verify that it is not available on your machine and install it and try again. I will try to have planemo give a clearer error in this case if it is indeed the problem.
-John
On Tue, Nov 17, 2015 at 8:21 PM, Tiago Antao tra@popgen.net wrote:
On Tue, 17 Nov 2015 14:48:03 +0000 John Chilton jmchilton@gmail.com wrote:
Thanks for the bug report. Somehow Galaxy isn't installing the development wheels into the transient Galaxy's virtualenv, I've wiped out my planemo caches and I can't reproduce this locally.
From planemo 0.19 to 0.20 I have also found that problem, but I installed many tools on my conda environment to compensate for that (I should have reported that bug also, sorry)
Can you send me the green log messages at the beginning of the test command as well as the few lines after them (maybe just paste the whole thing into a gist or something).
I have put everything on the log on this gist: https://gist.github.com/tiagoantao/488172904527ce854110 Note that my environment is problematic (as in having too much stuff) as I had to pip and conda install quite a few packages due to the virtualenv not being in use.
Thanks, Tiago