L.S.
I'm having trouble getting Sun Grid Engine and galaxy to work. The steps I did: #hg clone http://www.bx.psu.edu/hg/galaxy galaxy_dist #cd galaxy_dist #sh setup.sh #SGE_ROOT=/usr/local/gridengine python scripts/scramble.py DRMAA_python
I'm getting this error when building the DRMAA egg. Can you help me getting this egg build. There is a .egg verion downloadable from : http://code.google.com/p/drmaa-python/downloads/list When placing this one in the eggs dir it does not work.
The SGE 6u4 is installed and working correctly.
##################################################################### # SGE_ROOT=/usr/local/gridengine python scripts/scramble.py DRMAA_python fetch_one(): Trying to fetch: http://eggs.g2.bx.psu.edu/new/DRMAA_python/DRMAA_python-0.2.tar.gz fetch_one(): Fetched to: /usr/local/galaxy_dist/scripts/scramble/archives/DRMAA_python-0.2.tar.gz unpack_source(): Unpacked to: /usr/local/galaxy_dist/scripts/scramble/build/py2.6-linux-x86_64-ucs4/DRMAA_python copy_build_script(): Using build script /usr/local/galaxy_dist/scripts/scramble/scripts/DRMAA_python.py run_scramble_script(): Beginning build run_scramble_script(): Executing in /usr/local/galaxy_dist/scripts/scramble/build/py2.6-linux-x86_64-ucs4/DRMAA_python: /usr/bin/python -ES scramble.py
--------------------------------------------------------------------------- This script requires setuptools version 0.6c11 to run (even to display help). I will attempt to download it for you (from http://pypi.python.org/packages/2.6/s/setuptools/), but you may need to enable firewall access for this script first. I will start the download in 8 seconds.
(Note: if this machine does not have network access, please obtain the file
http://pypi.python.org/packages/2.6/s/setuptools/setuptools-0.6c11-py2.6.egg
and place it in this directory before rerunning this script.) --------------------------------------------------------------------------- Downloading http://pypi.python.org/packages/2.6/s/setuptools/setuptools-0.6c11-py2.6.egg Traceback (most recent call last): File "scramble.py", line 14, in <module> from scramble_lib import * File "../../../lib/scramble_lib.py", line 146, in <module> use_setuptools( download_delay=8, to_dir=os.path.dirname( __file__ ) ) File "/usr/local/galaxy_dist/scripts/scramble/build/py2.6-linux-x86_64-ucs4/DRMAA_python/ez_setup.py", line 119, in use_setuptools return do_download() File "/usr/local/galaxy_dist/scripts/scramble/build/py2.6-linux-x86_64-ucs4/DRMAA_python/ez_setup.py", line 99, in do_download import setuptools; setuptools.bootstrap_install_from = egg File "/usr/local/galaxy_dist/scripts/scramble/lib/setuptools-0.6c11-py2.6.egg/setuptools/__init__.py", line 2, in <module> File "/usr/local/galaxy_dist/scripts/scramble/lib/setuptools-0.6c11-py2.6.egg/setuptools/extension.py", line 2, in <module> File "/usr/local/galaxy_dist/scripts/scramble/lib/setuptools-0.6c11-py2.6.egg/setuptools/dist.py", line 5, in <module> File "/usr/local/galaxy_dist/scripts/scramble/lib/setuptools-0.6c11-py2.6.egg/setuptools/command/install.py", line 2, in <module> File "/usr/lib/python2.6/distutils/command/install.py", line 21, in <module> from site import USER_BASE File "/usr/local/galaxy_dist/scripts/scramble/lib/setuptools-0.6c11-py2.6.egg/site.py", line 73, in <module> # Enable per user site-packages directory File "/usr/local/galaxy_dist/scripts/scramble/lib/setuptools-0.6c11-py2.6.egg/site.py", line 38, in __boot configuration files, foo.pth and bar.pth. Assume foo.pth contains the ImportError: Couldn't find the real 'site' module Traceback (most recent call last): File "scripts/scramble.py", line 44, in <module> egg.scramble() File "/usr/local/galaxy_dist/lib/galaxy/eggs/scramble.py", line 57, in scramble self.run_scramble_script() File "/usr/local/galaxy_dist/lib/galaxy/eggs/scramble.py", line 206, in run_scramble_script raise ScrambleFailure( self, "%s(): Egg build failed for %s %s" % ( sys._getframe().f_code.co_name, self.name, self.version ) ) galaxy.eggs.scramble.ScrambleFailure: run_scramble_script(): Egg build failed for DRMAA_python 0.2 #####################################################################
Thanks,
//Michel