Hi Ilya, Thanks for the contribution; most of it has been committed in changeset 0ef81af1de09 A couple notes: *I couldn't transplant your changes because your commit did not include recent changes to the Cufflinks wrapper. It appears you didn't merge correctly with the main repository at some point; please try to merge correctly as it speeds up the inclusion process significantly on our end. *I didn't include your changes to the Tophat wrapper because merging was incorrect and I couldn't figure out what you were trying to do. Let us know if you have any questions. Best, J. On Jul 27, 2011, at 7:26 PM, Chorny, Ilya wrote:
I made some changes to the cufflinks wrapper. I added the -g/--GTF-guide use reference transcript annotation to guide assembly as an option. The version number needs to still be updated in my commit.
https://bitbucket.org/ichorny/galaxy-central/changeset/fc5e24d453e5
Ilya Chorny Ph.D. Bioinformatics – Intern ichorny@illumina.com 858-202-4582