Dnia 2015-07-29, śro o godzinie 18:43 -0400, Dannon Baker pisze:
Hi Zuzanna,
You can temporarily relocate the 'pkg_resources.py' that ships with Galaxy (and delete the corresponding .pyc file) to get around this error. Let me know if this doesn't work for you, though, and I can help debug some more.
We're hoping to swap to new dependency management code that should resolve this error in a coming release.
Dear Dannon,
this solution worked fine. However despite the fact I copied this file back before starting Galaxy I have: [galaxy@galaxy ~]$ Some eggs are out of date, attempting to fetch... Warning: pbr (a dependent egg of sqlalchemy-migrate) cannot be fetched setuptools 18.0.1 couldn't be downloaded automatically. You can try building it by hand with: python scripts/scramble.py -c config/galaxy.ini -e setuptools Fetch failed.
I have systemtools 18.0.1 and pbr installed by pip2.7 on the system, why can't Galaxy use these? Also pbr is not in eggs.ini and setuptools will not compile using scramble, even if the files lib/pkg_resources.* are not there: creating dist creating 'dist/setuptools-18.0.1-py2.7.egg' and adding 'build/bdist.linux-x86_64/egg' to it removing 'build/bdist.linux-x86_64/egg' (and everything under it) Traceback (most recent call last): File "scripts/scramble.py", line 50, in <module> egg.scramble() File "/home/galaxy/galaxy-dist/lib/galaxy/eggs/scramble.py", line 60, in scramble raise ScrambleFailure( self, "%s(): Egg build for %s did not appear to fail, but no egg found to copy from expected path:\n %s" % ( sys._getframe().f_code.co_name, self.name, new_egg ) ) galaxy.eggs.scramble.ScrambleFailure: scramble(): Egg build for setuptools did not appear to fail, but no egg found to copy from expected path: /home/galaxy/galaxy-dist/scripts/scramble/build/py2.7-linux-x86_64-ucs4/setuptools/dist/setuptools-18.0.1-py2.7-linux-x86_64-ucs4.egg
Full output: http://www.wklej.org/id/1765369/