Hello All,
I am trying to setup job submission to pbs server running on our cluster.
I have python 2.7 installed in /usr/local along with easy_install. But when trying to compile pbs_python I am getting following error: [galaxy@galaxy galaxy-dist]$ LIBTORQUE_DIR=/usr/lib python scripts/scramble.py -e pbs_python fetch_one(): Trying to fetch: http://eggs.galaxyproject.org/pbs_python/pbs_python-4.3.5.tar.gz fetch_one(): Fetched to: /home/galaxy/galaxy-dist/scripts/scramble/archives/pbs_python-4.3.5.tar.gz unpack_source(): Unpacked to: /home/galaxy/galaxy-dist/scripts/scramble/build/py2.7-linux-x86_64-ucs4/pbs_python copy_build_script(): Using build script /home/galaxy/galaxy-dist/scripts/scramble/scripts/pbs_python.py run_scramble_script(): Beginning build run_scramble_script(): Executing in /home/galaxy/galaxy-dist/scripts/scramble/build/py2.7-linux-x86_64-ucs4/pbs_python: /home/galaxy/galaxy-python/python scramble.py Traceback (most recent call last): File "scramble.py", line 14, in <module> from scramble_lib import * File "../../../lib/scramble_lib.py", line 146, in <module> from setuptools import * File "build/bdist.linux-x86_64/egg/setuptools/__init__.py", line 11, in <module> File "build/bdist.linux-x86_64/egg/setuptools/extension.py", line 8, in <module> File "build/bdist.linux-x86_64/egg/setuptools/dist.py", line 21, in <module> AttributeError: 'module' object has no attribute 'packaging' Traceback (most recent call last): File "scripts/scramble.py", line 50, in <module> egg.scramble() File "/home/galaxy/galaxy-dist/lib/galaxy/eggs/scramble.py", line 57, in scramble self.run_scramble_script() File "/home/galaxy/galaxy-dist/lib/galaxy/eggs/scramble.py", line 210, in run_scramble_script raise ScrambleFailure( self, "%s(): Egg build failed for %s %s" % ( sys._getframe().f_code.co_name, self.name, self.version ) ) galaxy.eggs.scramble.ScrambleFailure: run_scramble_script(): Egg build failed for pbs_python 4.3.5
I also tried setuptools-18.0.1 installed in user's local path but I am still getting the same error.
It is Centos 6.6 OS. Any help would be appreciated.