I get this error occasionally:
"/bin/sh: 1: /opt/galaxy/web/database/job_working_directory/000/100/galaxy_100.sh: Text file busy"
When this occurs, the step fails outright. Resubmitting the step resolves the issue and things run no problem. If this error appears early in a long workflow, I have to manually resubmit ALL dependent steps... what a pain!
Perhaps this is something the Galaxy job scheduler can look out for, flush() the system, sleep() a second or two to let the file write and close, and then rerun. A more fault-tolerant way of running workflows without unnecessary human intervention.
Cheers, -Evan Bollig Research Associate | Application Developer | User Support Consultant Minnesota Supercomputing Institute 599 Walter Library 612 624 1447 evan@msi.umn.edu boll0107@umn.edu