details: http://www.bx.psu.edu/hg/galaxy/rev/ebfc9236bf5a changeset: 3618:ebfc9236bf5a user: Anton Nekrutenko anton@bx.psu.edu date: Wed Apr 07 08:44:57 2010 -0400 description: Updated output format for solid2fastq converter
diffstat:
tools/next_gen_conversion/solid2fastq.xml | 4 ++-- tools/samtools/pileup_parser.xml | 2 +- 2 files changed, 3 insertions(+), 3 deletions(-)
diffs (26 lines):
diff -r 8fa4e8c12dfc -r ebfc9236bf5a tools/next_gen_conversion/solid2fastq.xml --- a/tools/next_gen_conversion/solid2fastq.xml Tue Apr 06 19:00:39 2010 -0400 +++ b/tools/next_gen_conversion/solid2fastq.xml Wed Apr 07 08:44:57 2010 -0400 @@ -35,8 +35,8 @@ </param> </inputs> <outputs> - <data format="fastqsanger" name="out_file1"/> - <data format="fastqsanger" name="out_file2"> + <data format="fastqcssanger" name="out_file1"/> + <data format="fastqcssanger" name="out_file2"> <filter>is_run['paired'] == 'yes'</filter> </data> </outputs> diff -r 8fa4e8c12dfc -r ebfc9236bf5a tools/samtools/pileup_parser.xml --- a/tools/samtools/pileup_parser.xml Tue Apr 06 19:00:39 2010 -0400 +++ b/tools/samtools/pileup_parser.xml Wed Apr 07 08:44:57 2010 -0400 @@ -353,7 +353,7 @@
**Example 3**: Report everything and print total number of differences
-If you set the **Print total number of differences?** to **Yes** the tool will print an additional column with the total number of reads where a devinat base is above the quality threshold cutoff. So, seetiing parametrs like this: +If you set the **Print total number of differences?** to **Yes** the tool will print an additional column with the total number of reads where a devinat base is above the quality threshold. So, seetiing parametrs like this:
.. image:: ../static/images/pileup_parser_help3.png