Hi Jim Try setting it like this: default_cluster_job_runner = drmaa://-w n -l mem_free=16G/
I've just tried it and worked fine.
Sorry for a delay in getting back to you, Enis
On Tue, Aug 5, 2014 at 6:44 PM, Jim McCusker jmccusker@5amsolutions.com wrote:
I have a galaxy/cloudman cluster where I would like to pass a "-l mem_free=16G" parameter when galaxy submits the job to SGE. I've tried adding it like this:
default_cluster_job_runner = drmaa://-l mem_free=16G/
(it was: default_cluster_job_runner = drmaa:/// )
but now the jobs don't even submit. Am I wiping out other important parameters? How should I do this?
Thanks, Jim
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