On Wed, May 2, 2012 at 9:58 PM, Anne Pajon Anne.Pajon@cancer.org.uk wrote:
Hi Peter,
Thanks for the clarification, it is really helpful.
Would you mind sharing what needs to be done in term of configuration and instalation to transform the galaxy server into a submitting job to the cluster? Thanks.
You said you have an LSF cluster - so I have no idea, sorry :(
We're using SGE here. I'm presuming similar concepts apply - in our case a key step was getting qsub/qstat/qdel to work from the Galaxy server as well as the cluster head node - which required our cluster administrator to setup our Galaxy server as an SGE submit node.
Regards,
Peter