Hi John ,
First all, thank you very much for your quick reply. I will test your suggestion about pycurl, and tell you if it has worked. For the second question, i was wondering if it is possible with LWR to define a path (where are located the inputs) as an input (string input in the wrapper xml).
Thank you again for your help,
Le 19/11/2014 15:30, John Chilton a écrit :
If you install pycurl (globally or in a Galaxy's virtualenv) and set LWR_CURL_TRANSPORT=1 in Galaxy's environment than the LWR will stream large files with CURL instead of the mmap hack.
I don't understand your second question - the LWR should stream whatever data inputs are selected by the user. If you want the tool to be able to take many inputs you can use multiple="true" on your data parameter or use a repeat block. (https://wiki.galaxyproject.org/Admin/Tools/ToolConfigSyntax).
Hope this helps, -John
On Mon, Nov 17, 2014 at 3:04 AM, Misharl Monsoor firstname.lastname@example.org wrote:
In our lab, we are trying to connect our Galaxy instance to a Windows 7 64 bits server, in order to executes programs that need to be run within Windows. However we have a problem concerning the size of the input that is uploaded to the Windows server, it doesn't accept inputs with a size > 1.3 Gb ? We have the following problem with mmap function:
data = mmap.mmap(input.fileno(), 0, access=mmap.ACCESS_READ)
error: [Errno 12] Cannot allocate memory
I have another question concerning the inputs, is there a way to use several inputs that be uploaded to a Windows Server?
Thank you very much in advance,
Misharl Monsoor ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
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