details: http://www.bx.psu.edu/hg/galaxy/rev/46849d69d7e6 changeset: 3439:46849d69d7e6 user: Dan Blankenberg dan@bx.psu.edu date: Wed Feb 24 16:48:22 2010 -0500 description: Update test framework to allow not setting a value for optional DataToolParameter inputs.
diffstat:
lib/galaxy/tools/test.py | 21 +++++++++++++++++---- 1 files changed, 17 insertions(+), 4 deletions(-)
diffs (50 lines):
diff -r 841037edd8a0 -r 46849d69d7e6 lib/galaxy/tools/test.py --- a/lib/galaxy/tools/test.py Wed Feb 24 15:54:52 2010 -0500 +++ b/lib/galaxy/tools/test.py Wed Feb 24 16:48:22 2010 -0500 @@ -4,6 +4,9 @@ from parameters import basic from parameters import grouping from elementtree.ElementTree import XML +import logging + +log = logging.getLogger( __name__ )
class ToolTestBuilder( object ): """ @@ -27,8 +30,12 @@ if isinstance( input_value, grouping.Conditional ) or isinstance( input_value, grouping.Repeat ): self.__expand_grouping_for_data_input(name, value, extra, input_name, input_value) elif isinstance( self.tool.inputs[name], parameters.DataToolParameter ) and ( value, extra ) not in self.required_files: - self.required_files.append( ( value, extra ) ) - except: pass + if value is None: + assert self.tool.inputs[name].optional, '%s is not optional. You must provide a valid filename.' % name + else: + self.required_files.append( ( value, extra ) ) + except Exception, e: + log.debug( "Error in add_param for %s: %s" % ( name, e ) ) self.inputs.append( ( name, value, extra ) ) def add_output( self, name, file, sort ): self.outputs.append( ( name, file, sort ) ) @@ -39,7 +46,10 @@ for case in grouping_value.cases: for case_input_name, case_input_value in case.inputs.items(): if case_input_name == name and isinstance( case_input_value, basic.DataToolParameter ) and ( value, extra ) not in self.required_files: - self.required_files.append( ( value, extra ) ) + if value is None: + assert case_input_value.optional, '%s is not optional. You must provide a valid filename.' % name + else: + self.required_files.append( ( value, extra ) ) return True elif isinstance( case_input_value, grouping.Conditional ): self.__expand_grouping_for_data_input(name, value, extra, case_input_name, case_input_value) @@ -51,5 +61,8 @@ # one used ). for input_name, input_value in grouping_value.inputs.items(): if input_name == name and isinstance( input_value, basic.DataToolParameter ) and ( value, extra ) not in self.required_files: - self.required_files.append( ( value, extra ) ) + if value is None: + assert input_value.optional, '%s is not optional. You must provide a valid filename.' % name + else: + self.required_files.append( ( value, extra ) ) return True