Hi all,
I have installed Deseq (by vipints) from the main galaxy toolshed and have followed the make instructions but I'm still not unable to run it inside Galaxy and I get the following error.
(Path is the path to our local galaxy instance)
error: get_read_counts: Path/shed_tools/toolshed.g2.bx.psu.edu/repos/vipints/deseq_hts/2b3bb3348076/deseq_hts/deseq-hts_1.0/mex/get_reads.mex: failed to load: /mnt/all/cloudman/galaxy/clare/shed_tools/toolshed.g2.bx.psu.edu/repos/vipints/deseq_hts/2b3bb3348076/deseq_hts/deseq-hts_1.0/mex/get_reads.mex: undefined symbol: bam_index_destroy error: called from: error: Path/shed_tools/toolshed.g2.bx.psu.edu/repos/vipints/deseq_hts/2b3bb3348076/deseq_hts/deseq-hts_1.0/src/get_read_counts.m at line 97, column 34 starting Octave failed
I should add that I can run octave from command line and it seems to be working.
Any suggestions is much appreciated.
Thanks
Mahtab