Hi Ann, Are you able to share more of the stack trace, or a method for reproducing this? I'm assuming it's a local instance you're talking about -- what revision are you running, etc? Thanks! -Dannon On Sat, May 18, 2013 at 3:12 PM, Ann Holtz-Morris, M.S. < aholtzmorris@chori.org> wrote:
Hi, I used the SAM to FASTQ tool to divide78 lines of Illimina paired end sequences in SAM format to FASTQ format. The read 2 data set works fine, and I used the FASTQ masker and then FASTQ to FASTA tools.
I went to repeat those steps with the the read 1 data set. It errors with:
Error executing tool: maximum recursion depth exceeded while calling a Python object.
Thinking maybe the format was corrupted, I ran FASTQ groomer. Same result:
Error executing tool: maximum recursion depth exceeded while calling a Python object.
Thinking the SAM to FASTQ had a problem, I repeated it. Same result:
Error executing tool: maximum recursion depth exceeded while calling a Python object.
You get thepicture. Anything I try with this data gives the same error.
When I googled the error, the top results were all about large data sets, but this isn't a large set.
Any help greatly appreciated, Ann
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