18 Apr
2012
18 Apr
'12
5:21 p.m.
Dear all, I just installed Mira-Assembler via Galaxy tool sheds. As expected, it downloaded the wrappers into the "shed-tools" directory. Then I downloaded and installed Mira binaries on the system and add it to $PATH. Right now, mira can run successfully in the command line prompt. However when i run it in the Galaxy UI, i run into the below error: Return error code 1 from command: mira --job=denovo,genome,accurate SANGER_SETTINGS -LR:lsd=1:mxti=0:ft=fastq -FN:fqi=/media/partition2_/galaxydb_data/000/dataset_290.dat SOLEXA_SETTINGS -LR:lsd=1:ft=fastq -FN:fqi=/media/partition2_/galaxydb_data/000/dataset_290.dat COMMON_SETTINGS -OUT:orf=1:orc=1:ora=1:orw=1:orm=0:org=0:ors=0 -OUT:rrot=1:rtd=1 Anyone know why? Thanks in advance. Tyler