Hi, I'm trying to use the tool, however, when I run it I get:
python create_galaxy_users.py
Traceback (most recent call last): File "create_galaxy_users.py", line 2, in <module> from scripts.db_shell import * ImportError: No module named scripts.db_shell
I've set my PYTHONPATH to be ~/galaxy-dist/lib. What else do I need to do? I'm running the script from ~/galaxy-dist/ directory, but I get the same error if I copy it into the scripts directory. I've checked and I can see that the scripts.db_shell.py script exists
If I comment out the line then the next error I get is:
python create_galaxy_users.py Traceback (most recent call last): File "create_galaxy_users.py", line 7, in <module> from galaxy.security import GalaxyRBACAgent File "/home/galaxy/galaxy-dist/lib/galaxy/security/__init__.py", line 9, in <module> from galaxy.model.orm import * File "/home/galaxy/galaxy-dist/lib/galaxy/model/__init__.py", line 15, in <module> from galaxy.security import RBACAgent, get_permitted_actions ImportError: cannot import name RBACAgent
Any help much appreciated
Neil ----------------------------------------------------------------------
Message: 1 Date: Sat, 27 Apr 2013 14:07:49 -0500 From: John Chilton chilton@msi.umn.edu To: Adam Brenner aebrenne@uci.edu Cc: "galaxy-dev@lists.bx.psu.edu" galaxy-dev@lists.bx.psu.edu Subject: Re: [galaxy-dev] Command Line Tool for Creating New Users Message-ID: CANwbokctvXO-DFmamr77FU6BbDHGR1STG7mpH_LP+fE2nMcnag@mail.gmail.com Content-Type: text/plain; charset=ISO-8859-1
I put together a script to do this. It is described in the galaxy-dev thread titled: "[galaxy-dev] user creation using API". It doesn't actually use the API, it uses the db_shell.py script.
Hope this helps.
-John
On Thu, Apr 25, 2013 at 7:11 PM, Adam Brenner aebrenne@uci.edu wrote:
Howdy All,
I was wondering if anyone has created a command line tool that will add users to the Galaxy user database?
I did look into switching to external user authentication via nginx, however, this will result in us using the campus wide kerberos system and allowing ~30,000 people access to Galaxy... and thus offering us less fine grain control to Galaxy.
Anything anyone has to share would be much appreciated, -Adam
-- Adam Brenner Computer Science, Undergraduate Student Donald Bren School of Information and Computer Sciences
Research Computing Support Office of Information Technology http://www.oit.uci.edu/rcs/
University of California, Irvine www.ics.uci.edu/~aebrenne/ aebrenne@uci.edu ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
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End of galaxy-dev Digest, Vol 82, Issue 28 ******************************************