details: http://www.bx.psu.edu/hg/galaxy/rev/080b3c44963e changeset: 2866:080b3c44963e user: Anton Nekrutenko anton@bx.psu.edu date: Sat Oct 10 16:18:08 2009 -0400 description: Trimmer fix for fastq processing
1 file(s) affected in this change:
tools/filters/trimmer.py
diffs (14 lines):
diff -r 316b413c933b -r 080b3c44963e tools/filters/trimmer.py --- a/tools/filters/trimmer.py Sat Oct 10 14:03:08 2009 -0400 +++ b/tools/filters/trimmer.py Sat Oct 10 16:18:08 2009 -0400 @@ -83,9 +83,7 @@ print line continue
- if options.fastq and line.startswith('@'): - stop_err('Malformed fastq file: even numbered line starts with @') - + if line[0] not in invalid_starts: if col == 0: if int( options.end ) > 0: