Hey Peter,
Dave is out this week - so I have tried to fumble around and see if I
could make some progress on this. I found some bugs in a recent commit
and fixed them - that might help
(
https://bitbucket.org/galaxy/galaxy-central/commits/b81798f94dc0fd14de1d5...).
I also have enabled more verbose logging that might help those
"History in error state" exceptions
(
https://bitbucket.org/galaxy/galaxy-central/commits/a799879a82c54c2d1afec...)
but I am not sure it will propagate through to the tool shed API - we
will see I guess.
If the install and test framework just picks up the latest central -
these fixes will hopefully be reflected in the next run.
-John
On Wed, Nov 19, 2014 at 4:48 AM, Peter Cock <p.j.a.cock(a)googlemail.com> wrote:
On Thu, Nov 6, 2014 at 11:08 AM, Peter Cock
<p.j.a.cock(a)googlemail.com> wrote:
> Thanks Dave,
>
> The good news is yes, the tests are running again on the
> Test Tool Shed (although not the main Tool Shed yet), and
> many of my tools now have successful test results from
> last night.
>
> e.g. My new basic mummer tool which now has a full set
> of dependency packages thanks to Bjoern:
>
https://testtoolshed.g2.bx.psu.edu/view/peterjc/mummer
>
> The bad news is there are many unexpected failures with:
> "Exception: History in error state."
>
> I'm sure you'll learn more once you look over the logs,
>
> Thank you,
>
> Peter
Hi Dave,
Any progress? All the following seem to have been tested
in the last few days on the TestToolShed, but failed with
"Exception: History in error state."
https://testtoolshed.g2.bx.psu.edu/view/peterjc/blast2go
https://testtoolshed.g2.bx.psu.edu/view/peterjc/blastxml_to_top_descr
https://testtoolshed.g2.bx.psu.edu/view/peterjc/clinod
https://testtoolshed.g2.bx.psu.edu/view/peterjc/fastq_paired_unpaired
https://testtoolshed.g2.bx.psu.edu/view/peterjc/get_orfs_or_cdss
https://testtoolshed.g2.bx.psu.edu/view/peterjc/mira_assembler
https://testtoolshed.g2.bx.psu.edu/view/peterjc/ncbi_blast_plus
https://testtoolshed.g2.bx.psu.edu/view/peterjc/nlstradamus
https://testtoolshed.g2.bx.psu.edu/view/peterjc/seq_filter_by_id
https://testtoolshed.g2.bx.psu.edu/view/peterjc/seq_primer_clip
https://testtoolshed.g2.bx.psu.edu/view/peterjc/seq_rename
https://testtoolshed.g2.bx.psu.edu/view/peterjc/seq_select_by_id
That's about half of my TestToolShed repositories - most
of the others report their tests passed :)
I am also seeing unexpected problems with packages, e.g.
https://testtoolshed.g2.bx.psu.edu/view/iuc/package_blast_plus_2_2_29
Error getting revision e78bbab7933d of repository
package_blast_plus_2_2_29 owned by iuc: An entry for the repository
was not found in the database.
Thanks,
Peter
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