Hi,
I am struggling at integrating galaxy with our cluster. I am currently running galaxy on a separate server machine from our LSF cluster. The DRMAA library has been installed on the cluster and I've re-installed galaxy into a shared file system visible and accessible from both the server and the cluster.
I've read the wiki page: http://wiki.g2.bx.psu.edu/Admin/Config/Performance/Cluster and tried to follow the "unified method" without much success so far. After spending some time digging/reading the mailing list, I would like to be sure that I understand the problem well enough before changing our plans.
Am I right to think that there is no way to make the system works because I cannot currently configure galaxy to ssh into the cluster head node for submitting jobs to the scheduler?
Is the only way forward to have a dedicated cluster node where I could run galaxy on it?
Thanks in advance for your help. Kind regards, Anne. -- Anne Pajon, Ph.D. Cancer Research UK - Cambridge Research Institute Li Ka Shing Centre, Robinson Way, Cambridge CB2 0RE anne.pajon@cancer.org.uk | +44 (0)1223 404 334
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