Lance:
Here is github URL:
https://github.com/nekrut/freebayes
On Wed, Jun 25, 2014 at 2:40 PM, Lance Parsons lparsons@princeton.edu wrote:
Thanks for the major update of the Freebayes wrapper, excellent!
I've run into two issues, however.
- When using "set allelic scope" I get the following error:
Fatal error: Exit code 1 () freebayes: unrecognized option `--min-repeat-length' did you mean --min-repeat-size ?
- When using a vcf file as input I get the following error:
Fatal error: Exit code 1 () open: No such file or directory [bgzf_check_bgzf] failed to open the file: input_variant_vcf.vcf.gz [tabix++] was bgzip used to compress this file? input_variant_vcf.vcf.gz
I'd be happy to help resolve these. Is there a bitbucket repo somewhere to submit pull requests?
-- Lance Parsons - Scientific Programmer 134 Carl C. Icahn Laboratory Lewis-Sigler Institute for Integrative Genomics Princeton University
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