Timeout detected. (data connection) Could not retrieve directory listing Error listing directory '/'. However, when I tried from Ubuntu terminal it gets connected. However, I am getting below error: asif@ubuntu:~$ ftp 10.196.106.60 8021 Connected to 10.196.106.60. 220 ProFTPD 1.3.5rc3 Server (Public Galaxy FTP) [::ffff:172.17.0.2] Name (10.196.106.60:asif): rezaul.karim@insight-centre.org 331 Password required for rezaul.karim@insight-centre.org Password: 230 User rezaul.karim@insight-centre.org logged in Remote system type is UNIX. Using binary mode to transfer files. ftp> ls 500 Illegal PORT command ftp: bind: Address already in use ftp> quit 221 Goodbye. Regards, _________________________________ *Md. Rezaul Karim*, BSc, MSc Researcher, INSIGHT Centre for Data Analytics National University of Ireland, Galway IDA Business Park, Dangan, Galway, Ireland Web: http://www.reza-analytics.eu/index.html <http://139.59.184.114/index.html> On 23 June 2017 at 12:01, Devon Ryan <dpryan@dpryan.com> wrote:
Do you get an error of some sort?
-- Devon Ryan, Ph.D. Email: dpryan@dpryan.com Data Manager/Bioinformatician Max Planck Institute of Immunobiology and Epigenetics Stübeweg 51 79108 Freiburg Germany <devon.ryan@dzne.de>
On Fri, Jun 23, 2017 at 12:33 PM, Md. Rezaul Karim < rezaul.karim@insight-centre.org> wrote:
Hi Devon,
I tried to connect to Galaxy instance with FTP client WinSCP as follows:
[image: Inline images 1]
But no luck. Even I tried with the DNS (i.e. http://bioopenergalaxy.insight-centre.org/) and changing SFTP to FTP and tried with port number 21 and 8021 too.
Regards, _________________________________ *Md. Rezaul Karim*, BSc, MSc Researcher, INSIGHT Centre for Data Analytics National University of Ireland, Galway IDA Business Park, Dangan, Galway, Ireland Web: http://www.reza-analytics.eu/index.html <http://139.59.184.114/index.html>
On 23 June 2017 at 11:05, Md. Rezaul Karim <rezaul.karim@insight-centre.o rg> wrote:
Ok, thanks for the clarification. I will try again and get back to you.
On Jun 23, 2017 11:03 AM, "Devon Ryan" <dpryan@dpryan.com> wrote:
If your user is an admin then yes. Each user can use their normal login credentials. -- Devon Ryan, Ph.D. Email: dpryan@dpryan.com Data Manager/Bioinformatician Max Planck Institute of Immunobiology and Epigenetics Stübeweg 51 79108 Freiburg Germany
On Fri, Jun 23, 2017 at 11:45 AM, Md. Rezaul Karim <rezaul.karim@insight-centre.org> wrote:
Did you mean using the admin user email id and the password?
Regards, _________________________________ Md. Rezaul Karim, BSc, MSc Researcher, INSIGHT Centre for Data Analytics National University of Ireland, Galway IDA Business Park, Dangan, Galway, Ireland Web: http://www.reza-analytics.eu/index.html
On 23 June 2017 at 10:44, Devon Ryan <dpryan@dpryan.com> wrote:
You should be able to login with the email address and password that you use for Galaxy then. That works for my instances at least. -- Devon Ryan, Ph.D. Email: dpryan@dpryan.com Data Manager/Bioinformatician Max Planck Institute of Immunobiology and Epigenetics Stübeweg 51 79108 Freiburg Germany
On Fri, Jun 23, 2017 at 11:38 AM, Md. Rezaul Karim <rezaul.karim@insight-centre.org> wrote: > Hi Devon, > > Yes, I'm running the galaxy-docker-stable from Björn and my
RiboGalaxy
> is > built on top of it (version 17.05). My system admin has provided me with > the > IP address of this DNS and when I issue the FTP command as follows: > > asif@ubuntu:~$ ftp 10.196.106.60 8021 > > It shows: > > Connected to 10.196.106.60. > 220 ProFTPD 1.3.5rc3 Server (Public Galaxy FTP) [::ffff:172.17.0.2] > Name (10.196.106.60:asif): > > It seems ProFTPD is already configured. While running the container, > port > 8021 was mapped to 21. > > > Regards, > _________________________________ > Md. Rezaul Karim, BSc, MSc > Researcher, INSIGHT Centre for Data Analytics > National University of Ireland, Galway > IDA Business Park, Dangan, Galway, Ireland > Web: http://www.reza-analytics.eu/index.html > > On 23 June 2017 at 10:30, Devon Ryan <dpryan@dpryan.com> wrote: >> >> Are you using galaxy-docker-stable from Björn >> (https://github.com/bgruening/docker-galaxy-stable) or did you make >> your own dockerized-Galaxy version? Björn's runs proFTPd by default, >> so if you're using it then ensure that's running in the container. >> >> Devon >> -- >> Devon Ryan, Ph.D. >> Email: dpryan@dpryan.com >> Data Manager/Bioinformatician >> Max Planck Institute of Immunobiology and Epigenetics >> Stübeweg 51 >> 79108 Freiburg >> Germany >> >> >> On Fri, Jun 23, 2017 at 11:17 AM, Md. Rezaul Karim >> <rezaul.karim@insight-centre.org> wrote: >> > Dear All, >> > >> > I have Dockerized the Galaxy and it's running as a containerized >> > application >> > on the DC/OS server. It can be accessed at >> > http://bioopenergalaxy.insight-centre.org/. >> > >> > However, I'm wondering how to FTP files on it. Please note that I >> > have >> > the >> > following configuration on the galaxy.ini file: >> > >> > # This should point to a directory containing subdirectories matching >> > users' >> > identifier (defaults to e-mail), where Galaxy will look for files. >> > ftp_upload_dir = /export/ftp >> > >> > # This should be the hostname of your FTP server, which will be >> > provided >> > to >> > users in the help text. >> > ftp_upload_site = bioopenergalaxy.insight-centre.org >> > >> > >> > Any help or pointer would be highly appreciated. >> > >> > >> > >> > >> > Regards, >> > _________________________________ >> > Md. Rezaul Karim, BSc, MSc >> > Researcher, INSIGHT Centre for Data Analytics >> > National University of Ireland, Galway >> > IDA Business Park, Dangan, Galway, Ireland >> > Web: http://www.reza-analytics.eu/index.html >> > >> > ___________________________________________________________ >> > Please keep all replies on the list by using "reply all" >> > in your mail client. To manage your subscriptions to this >> > and other Galaxy lists, please use the interface at: >> > https://lists.galaxyproject.org/ >> > >> > To search Galaxy mailing lists use the unified search at: >> > http://galaxyproject.org/search/ > >
