Timeout detected. (data connection)
Could not retrieve directory listing
Error listing directory '/'.
However, when I tried from Ubuntu terminal it gets connected. However, I am
getting below error:
asif@ubuntu:~$ ftp 10.196.106.60 8021
Connected to 10.196.106.60.
220 ProFTPD 1.3.5rc3 Server (Public Galaxy FTP) [::ffff:172.17.0.2]
Name (10.196.106.60:asif): rezaul.karim(a)insight-centre.org
331 Password required for rezaul.karim(a)insight-centre.org
Password:
230 User rezaul.karim(a)insight-centre.org logged in
Remote system type is UNIX.
Using binary mode to transfer files.
ftp> ls
500 Illegal PORT command
ftp: bind: Address already in use
ftp> quit
221 Goodbye.
Regards,
_________________________________
*Md. Rezaul Karim*, BSc, MSc
Researcher, INSIGHT Centre for Data Analytics
National University of Ireland, Galway
IDA Business Park, Dangan, Galway, Ireland
Web:
Do you get an error of some sort?
--
Devon Ryan, Ph.D.
Email: dpryan(a)dpryan.com
Data Manager/Bioinformatician
Max Planck Institute of Immunobiology and Epigenetics
Stübeweg 51
79108 Freiburg
Germany
<devon.ryan(a)dzne.de>
On Fri, Jun 23, 2017 at 12:33 PM, Md. Rezaul Karim <
rezaul.karim(a)insight-centre.org> wrote:
> Hi Devon,
>
> I tried to connect to Galaxy instance with FTP client WinSCP as follows:
>
> [image: Inline images 1]
>
> But no luck. Even I tried with the DNS (i.e.
>
http://bioopenergalaxy.insight-centre.org/) and changing SFTP to FTP and
> tried with port number 21 and 8021 too.
>
>
>
>
> Regards,
> _________________________________
> *Md. Rezaul Karim*, BSc, MSc
> Researcher, INSIGHT Centre for Data Analytics
> National University of Ireland, Galway
> IDA Business Park, Dangan, Galway, Ireland
> Web:
http://www.reza-analytics.eu/index.html
> <
http://139.59.184.114/index.html>
>
> On 23 June 2017 at 11:05, Md. Rezaul Karim <rezaul.karim(a)insight-centre.o
> rg> wrote:
>
>> Ok, thanks for the clarification. I will try again and get back to you.
>>
>>
>>
>> On Jun 23, 2017 11:03 AM, "Devon Ryan" <dpryan(a)dpryan.com>
wrote:
>>
>>> If your user is an admin then yes. Each user can use their normal
>>> login credentials.
>>> --
>>> Devon Ryan, Ph.D.
>>> Email: dpryan(a)dpryan.com
>>> Data Manager/Bioinformatician
>>> Max Planck Institute of Immunobiology and Epigenetics
>>> Stübeweg 51
>>> 79108 Freiburg
>>> Germany
>>>
>>>
>>> On Fri, Jun 23, 2017 at 11:45 AM, Md. Rezaul Karim
>>> <rezaul.karim(a)insight-centre.org> wrote:
>>> > Did you mean using the admin user email id and the password?
>>> >
>>> > Regards,
>>> > _________________________________
>>> > Md. Rezaul Karim, BSc, MSc
>>> > Researcher, INSIGHT Centre for Data Analytics
>>> > National University of Ireland, Galway
>>> > IDA Business Park, Dangan, Galway, Ireland
>>> > Web:
http://www.reza-analytics.eu/index.html
>>> >
>>> > On 23 June 2017 at 10:44, Devon Ryan <dpryan(a)dpryan.com> wrote:
>>> >>
>>> >> You should be able to login with the email address and password
that
>>> >> you use for Galaxy then. That works for my instances at least.
>>> >> --
>>> >> Devon Ryan, Ph.D.
>>> >> Email: dpryan(a)dpryan.com
>>> >> Data Manager/Bioinformatician
>>> >> Max Planck Institute of Immunobiology and Epigenetics
>>> >> Stübeweg 51
>>> >> 79108 Freiburg
>>> >> Germany
>>> >>
>>> >>
>>> >> On Fri, Jun 23, 2017 at 11:38 AM, Md. Rezaul Karim
>>> >> <rezaul.karim(a)insight-centre.org> wrote:
>>> >> > Hi Devon,
>>> >> >
>>> >> > Yes, I'm running the galaxy-docker-stable from Björn and
my
>>> RiboGalaxy
>>> >> > is
>>> >> > built on top of it (version 17.05). My system admin has
provided
>>> me with
>>> >> > the
>>> >> > IP address of this DNS and when I issue the FTP command as
follows:
>>> >> >
>>> >> > asif@ubuntu:~$ ftp 10.196.106.60 8021
>>> >> >
>>> >> > It shows:
>>> >> >
>>> >> > Connected to 10.196.106.60.
>>> >> > 220 ProFTPD 1.3.5rc3 Server (Public Galaxy FTP)
[::ffff:172.17.0.2]
>>> >> > Name (10.196.106.60:asif):
>>> >> >
>>> >> > It seems ProFTPD is already configured. While running the
>>> container,
>>> >> > port
>>> >> > 8021 was mapped to 21.
>>> >> >
>>> >> >
>>> >> > Regards,
>>> >> > _________________________________
>>> >> > Md. Rezaul Karim, BSc, MSc
>>> >> > Researcher, INSIGHT Centre for Data Analytics
>>> >> > National University of Ireland, Galway
>>> >> > IDA Business Park, Dangan, Galway, Ireland
>>> >> > Web:
http://www.reza-analytics.eu/index.html
>>> >> >
>>> >> > On 23 June 2017 at 10:30, Devon Ryan <dpryan(a)dpryan.com>
wrote:
>>> >> >>
>>> >> >> Are you using galaxy-docker-stable from Björn
>>> >> >> (
https://github.com/bgruening/docker-galaxy-stable) or did
you
>>> make
>>> >> >> your own dockerized-Galaxy version? Björn's runs
proFTPd by
>>> default,
>>> >> >> so if you're using it then ensure that's running in
the container.
>>> >> >>
>>> >> >> Devon
>>> >> >> --
>>> >> >> Devon Ryan, Ph.D.
>>> >> >> Email: dpryan(a)dpryan.com
>>> >> >> Data Manager/Bioinformatician
>>> >> >> Max Planck Institute of Immunobiology and Epigenetics
>>> >> >> Stübeweg 51
>>> >> >> 79108 Freiburg
>>> >> >> Germany
>>> >> >>
>>> >> >>
>>> >> >> On Fri, Jun 23, 2017 at 11:17 AM, Md. Rezaul Karim
>>> >> >> <rezaul.karim(a)insight-centre.org> wrote:
>>> >> >> > Dear All,
>>> >> >> >
>>> >> >> > I have Dockerized the Galaxy and it's running as a
containerized
>>> >> >> > application
>>> >> >> > on the DC/OS server. It can be accessed at
>>> >> >> >
http://bioopenergalaxy.insight-centre.org/.
>>> >> >> >
>>> >> >> > However, I'm wondering how to FTP files on it.
Please note that
>>> I
>>> >> >> > have
>>> >> >> > the
>>> >> >> > following configuration on the galaxy.ini file:
>>> >> >> >
>>> >> >> > # This should point to a directory containing
subdirectories
>>> matching
>>> >> >> > users'
>>> >> >> > identifier (defaults to e-mail), where Galaxy will
look for
>>> files.
>>> >> >> > ftp_upload_dir = /export/ftp
>>> >> >> >
>>> >> >> > # This should be the hostname of your FTP server,
which will be
>>> >> >> > provided
>>> >> >> > to
>>> >> >> > users in the help text.
>>> >> >> > ftp_upload_site =
bioopenergalaxy.insight-centre.org
>>> >> >> >
>>> >> >> >
>>> >> >> > Any help or pointer would be highly appreciated.
>>> >> >> >
>>> >> >> >
>>> >> >> >
>>> >> >> >
>>> >> >> > Regards,
>>> >> >> > _________________________________
>>> >> >> > Md. Rezaul Karim, BSc, MSc
>>> >> >> > Researcher, INSIGHT Centre for Data Analytics
>>> >> >> > National University of Ireland, Galway
>>> >> >> > IDA Business Park, Dangan, Galway, Ireland
>>> >> >> > Web:
http://www.reza-analytics.eu/index.html
>>> >> >> >
>>> >> >> >
___________________________________________________________
>>> >> >> > Please keep all replies on the list by using
"reply all"
>>> >> >> > in your mail client. To manage your subscriptions to
this
>>> >> >> > and other Galaxy lists, please use the interface at:
>>> >> >> >
https://lists.galaxyproject.org/
>>> >> >> >
>>> >> >> > To search Galaxy mailing lists use the unified search
at:
>>> >> >> >
http://galaxyproject.org/search/
>>> >> >
>>> >> >
>>> >
>>> >
>>>
>>
>