Re: [galaxy-dev] How to FTP files on Dockerized version of Galaxy instance running on DC/OS server?

Do you get an error of some sort? -- Devon Ryan, Ph.D. Email: dpryan(a)dpryan.com Data Manager/Bioinformatician Max Planck Institute of Immunobiology and Epigenetics Stübeweg 51 79108 Freiburg Germany <devon.ryan(a)dzne.de&gt; On Fri, Jun 23, 2017 at 12:33 PM, Md. Rezaul Karim < rezaul.karim(a)insight-centre.org&gt; wrote: > Hi Devon, > > I tried to connect to Galaxy instance with FTP client WinSCP as follows: > > [image: Inline images 1] > > But no luck. Even I tried with the DNS (i.e. > http://bioopenergalaxy.insight-centre.org/) and changing SFTP to FTP and > tried with port number 21 and 8021 too. > > > > > Regards, > _________________________________ > *Md. Rezaul Karim*, BSc, MSc > Researcher, INSIGHT Centre for Data Analytics > National University of Ireland, Galway > IDA Business Park, Dangan, Galway, Ireland > Web: http://www.reza-analytics.eu/index.html > <http://139.59.184.114/index.html> > > On 23 June 2017 at 11:05, Md. Rezaul Karim <rezaul.karim(a)insight-centre.o > rg> wrote: > >> Ok, thanks for the clarification. I will try again and get back to you. >> >> >> >> On Jun 23, 2017 11:03 AM, "Devon Ryan" <dpryan(a)dpryan.com&gt; wrote: >> >>> If your user is an admin then yes. Each user can use their normal >>> login credentials. >>> -- >>> Devon Ryan, Ph.D. >>> Email: dpryan(a)dpryan.com >>> Data Manager/Bioinformatician >>> Max Planck Institute of Immunobiology and Epigenetics >>> Stübeweg 51 >>> 79108 Freiburg >>> Germany >>> >>> >>> On Fri, Jun 23, 2017 at 11:45 AM, Md. Rezaul Karim >>> <rezaul.karim(a)insight-centre.org&gt; wrote: >>> > Did you mean using the admin user email id and the password? >>> > >>> > Regards, >>> > _________________________________ >>> > Md. Rezaul Karim, BSc, MSc >>> > Researcher, INSIGHT Centre for Data Analytics >>> > National University of Ireland, Galway >>> > IDA Business Park, Dangan, Galway, Ireland >>> > Web: http://www.reza-analytics.eu/index.html >>> > >>> > On 23 June 2017 at 10:44, Devon Ryan <dpryan(a)dpryan.com&gt; wrote: >>> >> >>> >> You should be able to login with the email address and password that >>> >> you use for Galaxy then. That works for my instances at least. >>> >> -- >>> >> Devon Ryan, Ph.D. >>> >> Email: dpryan(a)dpryan.com >>> >> Data Manager/Bioinformatician >>> >> Max Planck Institute of Immunobiology and Epigenetics >>> >> Stübeweg 51 >>> >> 79108 Freiburg >>> >> Germany >>> >> >>> >> >>> >> On Fri, Jun 23, 2017 at 11:38 AM, Md. Rezaul Karim >>> >> <rezaul.karim(a)insight-centre.org&gt; wrote: >>> >> > Hi Devon, >>> >> > >>> >> > Yes, I'm running the galaxy-docker-stable from Björn and my >>> RiboGalaxy >>> >> > is >>> >> > built on top of it (version 17.05). My system admin has provided >>> me with >>> >> > the >>> >> > IP address of this DNS and when I issue the FTP command as follows: >>> >> > >>> >> > asif@ubuntu:~$ ftp 10.196.106.60 8021 >>> >> > >>> >> > It shows: >>> >> > >>> >> > Connected to 10.196.106.60. >>> >> > 220 ProFTPD 1.3.5rc3 Server (Public Galaxy FTP) [::ffff:172.17.0.2] >>> >> > Name (10.196.106.60:asif): >>> >> > >>> >> > It seems ProFTPD is already configured. While running the >>> container, >>> >> > port >>> >> > 8021 was mapped to 21. >>> >> > >>> >> > >>> >> > Regards, >>> >> > _________________________________ >>> >> > Md. Rezaul Karim, BSc, MSc >>> >> > Researcher, INSIGHT Centre for Data Analytics >>> >> > National University of Ireland, Galway >>> >> > IDA Business Park, Dangan, Galway, Ireland >>> >> > Web: http://www.reza-analytics.eu/index.html >>> >> > >>> >> > On 23 June 2017 at 10:30, Devon Ryan <dpryan(a)dpryan.com&gt; wrote: >>> >> >> >>> >> >> Are you using galaxy-docker-stable from Björn >>> >> >> (https://github.com/bgruening/docker-galaxy-stable) or did you >>> make >>> >> >> your own dockerized-Galaxy version? Björn's runs proFTPd by >>> default, >>> >> >> so if you're using it then ensure that's running in the container. >>> >> >> >>> >> >> Devon >>> >> >> -- >>> >> >> Devon Ryan, Ph.D. >>> >> >> Email: dpryan(a)dpryan.com >>> >> >> Data Manager/Bioinformatician >>> >> >> Max Planck Institute of Immunobiology and Epigenetics >>> >> >> Stübeweg 51 >>> >> >> 79108 Freiburg >>> >> >> Germany >>> >> >> >>> >> >> >>> >> >> On Fri, Jun 23, 2017 at 11:17 AM, Md. Rezaul Karim >>> >> >> <rezaul.karim(a)insight-centre.org&gt; wrote: >>> >> >> > Dear All, >>> >> >> > >>> >> >> > I have Dockerized the Galaxy and it's running as a containerized >>> >> >> > application >>> >> >> > on the DC/OS server. It can be accessed at >>> >> >> > http://bioopenergalaxy.insight-centre.org/. >>> >> >> > >>> >> >> > However, I'm wondering how to FTP files on it. Please note that >>> I >>> >> >> > have >>> >> >> > the >>> >> >> > following configuration on the galaxy.ini file: >>> >> >> > >>> >> >> > # This should point to a directory containing subdirectories >>> matching >>> >> >> > users' >>> >> >> > identifier (defaults to e-mail), where Galaxy will look for >>> files. >>> >> >> > ftp_upload_dir = /export/ftp >>> >> >> > >>> >> >> > # This should be the hostname of your FTP server, which will be >>> >> >> > provided >>> >> >> > to >>> >> >> > users in the help text. >>> >> >> > ftp_upload_site = bioopenergalaxy.insight-centre.org >>> >> >> > >>> >> >> > >>> >> >> > Any help or pointer would be highly appreciated. >>> >> >> > >>> >> >> > >>> >> >> > >>> >> >> > >>> >> >> > Regards, >>> >> >> > _________________________________ >>> >> >> > Md. Rezaul Karim, BSc, MSc >>> >> >> > Researcher, INSIGHT Centre for Data Analytics >>> >> >> > National University of Ireland, Galway >>> >> >> > IDA Business Park, Dangan, Galway, Ireland >>> >> >> > Web: http://www.reza-analytics.eu/index.html >>> >> >> > >>> >> >> > ___________________________________________________________ >>> >> >> > Please keep all replies on the list by using "reply all" >>> >> >> > in your mail client. To manage your subscriptions to this >>> >> >> > and other Galaxy lists, please use the interface at: >>> >> >> > https://lists.galaxyproject.org/ >>> >> >> > >>> >> >> > To search Galaxy mailing lists use the unified search at: >>> >> >> > http://galaxyproject.org/search/ >>> >> > >>> >> > >>> > >>> > >>> >> >