Yep, I'm able to reproduce it now, should have a resolution shortly. Thanks!
On Nov 7, 2011, at 12:24 PM, Chorny, Ilya wrote:
Dannon,
I just cloned a fresh version of galaxy-central. I create a workflow using just fastqc or groomer. I can run the work flow,etc. But when I publish it and try to run it from the published workflows page I get that error.
Ilya
-----Original Message----- From: Dannon Baker [mailto:dannonbaker@me.com] Sent: Monday, November 07, 2011 9:00 AM To: Chorny, Ilya Cc: galaxy-dev@lists.bx.psu.edu Subject: Re: [galaxy-dev] Error when clicking on published workflows
I think this is particular to this individual workflow (or perhaps a tool you're using within it). Anything special about it, or the tools within?
-Dannon
On Nov 7, 2011, at 11:54 AM, Chorny, Ilya wrote:
I pull the latest version of galaxy central and I still get this error when clicking on published workflows. Any thoughts?
Error - <type 'exceptions.TypeError'>: isinstance() arg 2 must be a class, type, or tuple of classes and types and below.
Best,
Ilya
From: galaxy-dev-bounces@lists.bx.psu.edu [mailto:galaxy-dev-bounces@lists.bx.psu.edu] On Behalf Of Chorny, Ilya Sent: Friday, November 04, 2011 2:45 PM To: galaxy-dev@lists.bx.psu.edu Subject: [galaxy-dev] Error when clicking on published workflows
URL: http://ussd-dev-swim02.illumina.com/galaxy2/u/ichorny/w/test Module paste.exceptions.errormiddleware:143 in __call__
app_iter = self.application(environ, start_response)
Module paste.debug.prints:98 in __call__
environ, self.app)
Module paste.wsgilib:539 in intercept_output
app_iter = application(environ, replacement_start_response)
Module paste.recursive:80 in __call__
return self.application(environ, start_response)
Module galaxy.web.framework.middleware.remoteuser:111 in __call__
return self.app( environ, start_response )
Module paste.httpexceptions:632 in __call__
return self.application(environ, start_response)
Module galaxy.web.framework.base:160 in __call__
body = method( trans, **kwargs )
Module galaxy.web.controllers.workflow:221 in display_by_username_and_slug
user_item_rating = user_item_rating, ave_item_rating=ave_item_rating, num_ratings=num_ratings )
Module galaxy.web.framework:718 in fill_template_mako
return template.render( **data )
Module mako.template:296 in render
return runtime._render(self, self.callable_, args, data)
Module mako.runtime:660 in _render
**_kwargs_for_callable(callable_, data))
Module mako.runtime:692 in _render_context
_exec_template(inherit, lclcontext, args=args, kwargs=kwargs)
Module mako.runtime:718 in _exec_template
callable_(context, *args, **kwargs)
Module _base_panels_mako:100 in render_body
__M_writer(unicode(self.center_panel()))
Module _display_base_mako:219 in render_center_panel
__M_writer(unicode(self.render_content()))
Module _display_base_mako:179 in render_render_content
__M_writer(unicode(self.render_item( item, item_data )))
Module workflow_display_mako:136 in render_render_item
__M_writer(unicode(do_inputs( tool.inputs, step.state.inputs, "", step )))
Module workflow_display_mako:91 in do_inputs
return render_do_inputs(context,inputs,values,prefix,step,other_values)
Module workflow_display_mako:216 in render_do_inputs
__M_writer(unicode(do_inputs( input.inputs, repeat_values[ i ], prefix + input.name + "_" + str(index) + "|",step, other_values )))
Module workflow_display_mako:181 in do_inputs
return render_do_inputs(context,inputs,values,prefix,step,other_values)
Module workflow_display_mako:246 in render_do_inputs
__M_writer(unicode(row_for_param( input, values[ input.name ], other_values, prefix, step )))
Module workflow_display_mako:179 in row_for_param
return render_row_for_param(context,param,value,other_values,prefix,step)
Module workflow_display_mako:300 in render_row_for_param
if isinstance( param, DataToolParameter ):
TypeError: isinstance() arg 2 must be a class, type, or tuple of classes and types
Ilya Chorny Ph.D. Bioinformatics Scientist I Illumina, Inc. 9885 Towne Centre Drive San Diego, CA 92121 Work: 858.202.4582 Email: ichorny@illumina.com Website: www.illumina.com
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