details: http://www.bx.psu.edu/hg/galaxy/rev/842af32c4e73 changeset: 2458:842af32c4e73 user: guru date: Thu Jun 25 15:34:05 2009 -0400 description: A tiny bug fix for Sort tool - the delimiter is now defaulted to tab.
2 file(s) affected in this change:
tools/filters/sorter.py tools/filters/sorter.xml
diffs (21 lines):
diff -r 8dfe971fcc27 -r 842af32c4e73 tools/filters/sorter.py --- a/tools/filters/sorter.py Thu Jun 25 15:29:24 2009 -0400 +++ b/tools/filters/sorter.py Thu Jun 25 15:34:05 2009 -0400 @@ -103,7 +103,7 @@ # Launch sort.
environ['LC_ALL'] = 'POSIX' - commandline = "sort -f"+style+"-k "+str(column)+" -o "+outputfile+" "+inputfile+order + commandline = "sort -f"+style+"-k "+str(column)+" -t $'\t' -o "+outputfile+" "+inputfile+order
errorcode, stdout = commands.getstatusoutput(commandline)
diff -r 8dfe971fcc27 -r 842af32c4e73 tools/filters/sorter.xml --- a/tools/filters/sorter.xml Thu Jun 25 15:29:24 2009 -0400 +++ b/tools/filters/sorter.xml Thu Jun 25 15:34:05 2009 -0400 @@ -1,4 +1,4 @@ -<tool id="sort1" name="Sort"> +<tool id="sort1" name="Sort" version="1.0.1"> <description>data in ascending or descending order</description> <command interpreter="python">sorter.py -i $input -o $out_file1 -cols $column -order $order -style $style</command> <inputs>