Re: [galaxy-dev] BioBlend: getting a list of datasets in a folder
Any ideas on how to do this? I'm trying to obtain a list of datasets that
are in a Shared Data Library. I can obtain the Library ID and FolderIDs
using BioBlend. However, I now want to get a list of dataIDs from within
the Library/Folder structure. I don't see a function which accomplishes
this in BioBlend. The closest thing I could find is "show_folders" (under
"Libraries"). However, this seems to just provide information regarding the
folder and not its contents. Is there a way to list the contents of a
"Shared Data Folder"? There seems to be similar functionality for what I'm
after in "History" (e.g. show_matching_datasets) but not for
"Library".
Any help would be greatly appreciated!
On Fri, Feb 24, 2017 at 10:29 AM, D K <danielfortin86(a)gmail.com> wrote:
I'm trying to get a list of all the datasets in a folder using
BioBlend. I
don't see a function for doing this in the API documentation. I can use
"show_folder" to get some information regarding the contents of a folder,
but not the dataset IDs themselves
This is as far as I've gotten:
s = gi.libraries.show_folder(LibID, folder_id = subfolderID)
>
print(s)
{u'parent_library_id': u'd413a19dec13d11e', u'update_time':
> u'2017-02-24T18:10:02.789955', u'description':
u'170124_M02550_0174_000000000-AV8FJ',
> u'name': u'170124_M02550_0174_000000000-AV8FJ', u'deleted':
False,
> u'item_count': 2, u'parent_id': u'Ff1b9846ab84237e7',
u'genome_build':
> u'?', u'model_class': u'LibraryFolder', u'id':
u'F84ffe6fca6c4fbda',
> u'library_path': [u'2017',
u'170124_M02550_0174_000000000-AV8FJ']}
There are two items (item_count) as expected, how do I get the actual
dataset IDs?
Thanks!
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