Re: [galaxy-dev] Running tools on command line

SHAUN WEBB wrote:

I want to run a few of the interval operation tools on the command line, however I am getting the following error:

Traceback (most recent call last): File "/home/swebb/galaxy/galaxy_dist/tools/new_operations/gops_join.py", line 11, in <module> from galaxy import eggs ImportError: No module named galaxy

I assume I may need to alter some Environmental variables. Any help appreciated.

Hi Shaun,

For many of the Python tools, you'll need to provide the path to Galaxy's lib directory:

% PYTHONPATH=/home/swebb/galaxy/galaxy_dist/lib python gops_join.py ...

--nate