details: http://www.bx.psu.edu/hg/galaxy/rev/a67ca0795efb changeset: 3557:a67ca0795efb user: rc date: Tue Mar 23 13:15:56 2010 -0400 description: lims: fixed a bug in the csv importer for samples
diffstat:
lib/galaxy/web/controllers/requests.py | 14 ++++++++++++-- lib/galaxy/web/controllers/requests_admin.py | 11 ++++++++++- 2 files changed, 22 insertions(+), 3 deletions(-)
diffs (59 lines):
diff -r 8f6fa47b21c4 -r a67ca0795efb lib/galaxy/web/controllers/requests.py --- a/lib/galaxy/web/controllers/requests.py Tue Mar 23 12:45:08 2010 -0400 +++ b/lib/galaxy/web/controllers/requests.py Tue Mar 23 13:15:56 2010 -0400 @@ -438,18 +438,28 @@ current_samples, details, edit_mode, libraries = self.__update_samples( trans, request, **kwd ) if params.get('import_samples_button', False) == 'Import samples': try: + lib_widget, folder_widget = self.__library_widgets(trans, request.user, + len(current_samples), + libraries, None, **kwd) file_obj = params.get('file_data', '') import csv reader = csv.reader(file_obj.file) for row in reader: - current_samples.append([row[0], row[1:]]) - return trans.fill_template( '/requests/show_request.mako', + current_samples.append(dict(name=row[0], + barcode='', + library=None, + folder=None, + lib_widget=lib_widget, + folder_widget=folder_widget, + field_values=row[1:])) + return trans.fill_template( '/admin/requests/show_request.mako', request=request, request_details=self.request_details(trans, request.id), current_samples=current_samples, sample_copy=self.__copy_sample(current_samples), details=details, edit_mode=edit_mode) + except: return trans.response.send_redirect( web.url_for( controller='requests', action='list', diff -r 8f6fa47b21c4 -r a67ca0795efb lib/galaxy/web/controllers/requests_admin.py --- a/lib/galaxy/web/controllers/requests_admin.py Tue Mar 23 12:45:08 2010 -0400 +++ b/lib/galaxy/web/controllers/requests_admin.py Tue Mar 23 13:15:56 2010 -0400 @@ -946,11 +946,20 @@ current_samples, details, edit_mode, libraries = self.__update_samples( trans, request, **kwd ) if params.get('import_samples_button', False) == 'Import samples': try: + lib_widget, folder_widget = self.__library_widgets(trans, request.user, + len(current_samples), + libraries, None, **kwd) file_obj = params.get('file_data', '') import csv reader = csv.reader(file_obj.file) for row in reader: - current_samples.append([row[0], row[1:]]) + current_samples.append(dict(name=row[0], + barcode='', + library=None, + folder=None, + lib_widget=lib_widget, + folder_widget=folder_widget, + field_values=row[1:])) return trans.fill_template( '/admin/requests/show_request.mako', request=request, request_details=self.request_details(trans, request.id),